User profiles for Severin Schink

Severin Schink

Harvard Medical School, Department of Systems Biology
Verified email at severin-schink.eu
Cited by 781

A global resource allocation strategy governs growth transition kinetics of Escherichia coli

DW Erickson, SJ Schink, V Patsalo, JR Williamson… - Nature, 2017 - nature.com
A grand challenge of systems biology is to predict the kinetic responses of living systems to
perturbations starting from the underlying molecular interactions. Changes in the nutrient …

Escalation of polymerization in a thermal gradient

CB Mast, S Schink, U Gerland… - Proceedings of the …, 2013 - National Acad Sciences
For the emergence of early life, the formation of biopolymers such as RNA is essential.
However, the addition of nucleotide monomers to existing oligonucleotides requires millimolar …

[HTML][HTML] Quantifying the benefit of a proteome reserve in fluctuating environments

M Mori, S Schink, DW Erickson, U Gerland… - Nature …, 2017 - nature.com
The overexpression of proteins is a major burden for fast-growing bacteria. Paradoxically,
recent characterization of the proteome of Escherichia coli found many proteins expressed in …

Slower growth of Escherichia coli leads to longer survival in carbon starvation due to a decrease in the maintenance rate

E Biselli, SJ Schink, U Gerland - Molecular systems biology, 2020 - embopress.org
Fitness of bacteria is determined both by how fast cells grow when nutrients are abundant
and by how well they survive when conditions worsen. Here, we study how prior growth …

[PDF][PDF] Death rate of E. coli during starvation is set by maintenance cost and biomass recycling

SJ Schink, E Biselli, C Ammar, U Gerland - Cell systems, 2019 - cell.com
To break down organismal fitness into molecular contributions, costs and benefits of cellular
components must be analyzed in all phases of the organism's life cycle. Here, we establish …

Glycolysis/gluconeogenesis specialization in microbes is driven by biochemical constraints of flux sensing

SJ Schink, D Christodoulou, A Mukherjee… - Molecular systems …, 2022 - embopress.org
Central carbon metabolism is highly conserved across microbial species, but can catalyze
very different pathways depending on the organism and their ecological niche. Here, we study …

Analysis of proteome adaptation reveals a key role of the bacterial envelope in starvation survival

S Schink, C Ammar, YF Chang, R Zimmer… - Molecular Systems …, 2022 - embopress.org
Bacteria reorganize their physiology upon entry to stationary phase. What part of this
reorganization improves starvation survival is a difficult question because the change in physiology …

[HTML][HTML] Neutrophils promote venular thrombosis by shaping the rheological environment for platelet aggregation

D Puhr-Westerheide, SJ Schink, M Fabritius… - Scientific reports, 2019 - nature.com
In advanced inflammatory disease, microvascular thrombosis leads to the interruption of blood
supply and provokes ischemic tissue injury. Recently, intravascularly adherent leukocytes …

[PDF][PDF] MetA is a “thermal fuse” that inhibits growth and protects Escherichia coli at elevated temperatures

SJ Schink, Z Gough, E Biselli, MG Huiman, YF Chang… - Cell reports, 2022 - cell.com
Adaptive stress resistance in microbes is mostly attributed to the expression of stress response
genes, including heat-shock proteins. Here, we report a response of E. coli to heat stress …

[PDF][PDF] Quantitative analysis of the nanopore translocation dynamics of simple structured polynucleotides

S Schink, S Renner, K Alim, V Arnaut, FC Simmel… - Biophysical journal, 2012 - cell.com
Nanopore translocation experiments are increasingly applied to probe the secondary
structures of RNA and DNA molecules. Here, we report two vital steps toward establishing …