User profiles for Shaomei He

Shaomei He

University of Wisconsin-Madison
Verified email at wisc.edu
Cited by 4557

Microbiology of 'Candidatus Accumulibacter' in activated sludge

S He, KD McMahon - Microbial biotechnology, 2011 - Wiley Online Library
‘Candidatus Accumulibacter’ is a biotechnologically important bacterial group that can
accumulate large amounts of intracellular polyphosphate, contributing to biological phosphorus …

Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities

…, KW Barry, AC McHardy, C Yeates, S He… - Nature …, 2006 - nature.com
Enhanced biological phosphorus removal (EBPR) is one of the best-studied microbially
mediated industrial processes because of its ecological and economic relevance. Despite this, it …

[HTML][HTML] Primer and platform effects on 16S rRNA tag sequencing

J Tremblay, K Singh, A Fern, ES Kirton, S He… - Frontiers in …, 2015 - frontiersin.org
Sequencing of 16S rRNA gene tags is a popular method for profiling and comparing microbial
communities. The protocols and methods used, however, vary considerably with regard to …

Candidatus Accumulibacter” Population Structure in Enhanced Biological Phosphorus Removal Sludges as Revealed by Polyphosphate Kinase Genes

S He, DL Gall, KD McMahon - Applied and environmental …, 2007 - Am Soc Microbiol
We investigated the fine-scale population structure of the “Candidatus Accumulibacter”
lineage in enhanced biological phosphorus removal (EBPR) systems using the polyphosphate …

Metagenomic analysis of phosphorus removing sludgecommunities

…, F Warnecke, K Barry, AC McHardy, C Yeates, S He… - Nature …, 2006 - osti.gov
Enhanced Biological Phosphorus Removal (EBPR) is not wellunderstood at the metabolic
level despite being one of the best-studiedmicrobially-mediated industrial processes due to its …

Validation of two ribosomal RNA removal methods for microbial metatranscriptomics

S He, O Wurtzel, K Singh, JL Froula, S Yilmaz… - Nature …, 2010 - nature.com
The predominance of rRNAs in the transcriptome is a major technical challenge in sequence-based
analysis of cDNAs from microbial isolates and communities. Several approaches …

Denitrification capabilities of two biological phosphorus removal sludges dominated by different 'Candidatus Accumulibacter' clades

JJ Flowers, S He, S Yilmaz, DR Noguera… - Environmental …, 2009 - Wiley Online Library
The capability of ‘Candidatus Accumulibacter’ to use nitrate as an electron acceptor for
phosphorus uptake was investigated using two activated sludge communities. The two …

[HTML][HTML] Comparative metagenomic and metatranscriptomic analysis of hindgut paunch microbiota in wood-and dung-feeding higher termites

S He, N Ivanova, E Kirton, M Allgaier, C Bergin… - PloS one, 2013 - journals.plos.org
Termites effectively feed on many types of lignocellulose assisted by their gut microbial
symbionts. To better understand the microbial decomposition of biomass with varied chemical …

A bacterial metapopulation adapts locally to phage predation despite global dispersal

V Kunin, S He, F Warnecke, SB Peterson… - Genome …, 2008 - genome.cshlp.org
Using a combination of bacterial and phage-targeted metagenomics, we analyzed two
geographically remote sludge bioreactors enriched in a single bacterial species Candidatus …

Dual role of humic substances as electron donor and shuttle for dissimilatory iron reduction

N Stern, J Mejia, S He, Y Yang… - … science & technology, 2018 - ACS Publications
Dissimilatory iron-reducing bacteria (DIRB) are known to use humic substances (HS) as
electron shuttles for dissimilatory iron reduction (DIR) by transferring electrons to HS-quinone …