User profiles for Shawn H. Pfeil
Shawn PfeilAssociate Professor of Physics, West Chester University of Pennsylvania Verified email at wcupa.edu Cited by 839 |
Quantifying internal friction in unfolded and intrinsically disordered proteins with single-molecule spectroscopy
Internal friction, which reflects the “roughness” of the energy landscape, plays an important
role for proteins by modulating the dynamics of their folding and other conformational …
role for proteins by modulating the dynamics of their folding and other conformational …
[HTML][HTML] Localizing internal friction along the reaction coordinate of protein folding by combining ensemble and single-molecule fluorescence spectroscopy
Abstract Theory, simulations and experimental results have suggested an important role of
internal friction in the kinetics of protein folding. Recent experiments on spectrin domains …
internal friction in the kinetics of protein folding. Recent experiments on spectrin domains …
Single-molecule spectroscopy of protein folding in a chaperonin cage
Molecular chaperones are known to be essential for avoiding protein aggregation in vivo,
but it is still unclear how they affect protein folding mechanisms. We use single-molecule …
but it is still unclear how they affect protein folding mechanisms. We use single-molecule …
Microfluidic mixer designed for performing single-molecule kinetics with confocal detection on timescales from milliseconds to minutes
Microfluidic mixing in combination with single-molecule spectroscopy allows the investigation
of complex biomolecular processes under non-equilibrium conditions. Here we present a …
of complex biomolecular processes under non-equilibrium conditions. Here we present a …
A microfluidic mixing system for single-molecule measurements
SH Pfeil, CE Wickersham, A Hoffmann… - Review of Scientific …, 2009 - pubs.aip.org
This article describes the design and fabrication of a microfluidic mixing system optimized for
ultrasensitive optical measurements. Channels are replica-molded in polydimethylsiloxane …
ultrasensitive optical measurements. Channels are replica-molded in polydimethylsiloxane …
E. coli elongation factor Tu bound to a GTP analogue displays an open conformation equivalent to the GDP-bound form
JS Johansen, D Kavaliauskas, SH Pfeil… - Nucleic Acids …, 2018 - academic.oup.com
According to the traditional view, GTPases act as molecular switches, which cycle between
distinct ‘on’ and ‘off’ conformations bound to GTP and GDP, respectively. Translation …
distinct ‘on’ and ‘off’ conformations bound to GTP and GDP, respectively. Translation …
[HTML][HTML] Homopurine guanine-rich sequences in complex with N-methyl mesoporphyrin IX form parallel G-quadruplex dimers and display a unique symmetry tetrad
M Ye, EV Chen, SH Pfeil, KN Martin, T Atrafi… - Bioorganic & medicinal …, 2023 - Elsevier
DNA can fold into G-quadruplexes (GQs), non-canonical secondary structures formed by π-π
stacking of G-tetrads. GQs are important in many biological processes, which makes them …
stacking of G-tetrads. GQs are important in many biological processes, which makes them …
[HTML][HTML] Nanoaperture fabrication via colloidal lithography for single molecule fluorescence analysis
…, KY Chen, SA Fiorenza, AM Tate, SH Pfeil… - PLoS …, 2019 - journals.plos.org
In single molecule fluorescence studies, background emission from labeled substrates often
restricts their concentrations to non-physiological nanomolar values. One approach to …
restricts their concentrations to non-physiological nanomolar values. One approach to …
A comparison of the folding kinetics of a small, artificially selected DNA aptamer with those of equivalently simple naturally occurring proteins
C Lawrence, A Vallée‐Bélisle, SH Pfeil… - Protein …, 2014 - Wiley Online Library
The folding of larger proteins generally differs from the folding of similarly large nucleic
acids in the number and stability of the intermediates involved. To date, however, no similar …
acids in the number and stability of the intermediates involved. To date, however, no similar …
Tracking a molecular motor with a nanoscale optical encoder
Optical encoders are commonly used in macroscopic machines to make precise measurements
of distance and velocity by translating motion into a periodic signal. Here we show how …
of distance and velocity by translating motion into a periodic signal. Here we show how …