User profiles for Shayne D. Wierbowski
Shayne D. WierbowskiPh.D Candidate in Computational Biology, Cornell University Verified email at cornell.edu Cited by 446 |
[PDF][PDF] BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Connectivity webs mediate the unique biology of the mammalian brain. Yet, while cell circuit
maps are increasingly available, knowledge of their underlying molecular networks remains …
maps are increasingly available, knowledge of their underlying molecular networks remains …
Transcription imparts architecture, function and logic to enhancer units
Distal enhancers play pivotal roles in development and disease yet remain one of the least
understood regulatory elements. We used massively parallel reporter assays to perform …
understood regulatory elements. We used massively parallel reporter assays to perform …
[HTML][HTML] A 3D structural SARS-CoV-2–human interactome to explore genetic and drug perturbations
Emergence of new viral agents is driven by evolution of interactions between viral proteins
and host targets. For instance, increased infectivity of SARS-CoV-2 compared to SARS-CoV-…
and host targets. For instance, increased infectivity of SARS-CoV-2 compared to SARS-CoV-…
[HTML][HTML] Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations
Each human genome carries tens of thousands of coding variants. The extent to which this
variation is functional and the mechanisms by which they exert their influence remains largely …
variation is functional and the mechanisms by which they exert their influence remains largely …
Cross‐docking benchmark for automated pose and ranking prediction of ligand binding
Significant efforts have been devoted in the last decade to improving molecular docking
techniques to predict both accurate binding poses and ranking affinities. Some shortcomings in …
techniques to predict both accurate binding poses and ranking affinities. Some shortcomings in …
Structure-based validation can drastically underestimate error rate in proteome-wide cross-linking mass spectrometry studies
K Yugandhar, TY Wang, SD Wierbowski… - Nature …, 2020 - nature.com
Thorough quality assessment of novel interactions identified by proteome-wide cross-linking
mass spectrometry (XL-MS) studies is critical. Almost all current XL-MS studies have …
mass spectrometry (XL-MS) studies is critical. Almost all current XL-MS studies have …
A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice
Systematic mappings of protein interactome networks have provided invaluable functional
information for numerous model organisms. Here we develop PCR-mediated Linkage of …
information for numerous model organisms. Here we develop PCR-mediated Linkage of …
Extracting complementary insights from molecular phenotypes for prioritization of disease-associated mutations
Rapid advances in next-generation sequencing technology have resulted in an explosion of
whole-exome/genome sequencing data, providing an unprecedented opportunity to identify …
whole-exome/genome sequencing data, providing an unprecedented opportunity to identify …
A 3D structural interactome to explore the impact of evolutionary divergence, population variation, and small-molecule drugs on SARS-CoV-2-human protein-protein …
SD Wierbowski, S Liang, Y Chen, NM Andre, SM Lipkin… - bioRxiv, 2020 - biorxiv.org
The recent COVID-19 pandemic has sparked a global public health crisis. Vital to the
development of informed treatments for this disease is a comprehensive understanding of the …
development of informed treatments for this disease is a comprehensive understanding of the …
A full-proteome, interaction-specific characterization of mutational hotspots across human cancers
Rapid accumulation of cancer genomic data has led to the identification of an increasing
number of mutational hotspots with uncharacterized significance. Here we present a …
number of mutational hotspots with uncharacterized significance. Here we present a …