User profiles for Shayne D. Wierbowski

Shayne D. Wierbowski

Ph.D Candidate in Computational Biology, Cornell University
Verified email at cornell.edu
Cited by 446

[PDF][PDF] BraInMap elucidates the macromolecular connectivity landscape of mammalian brain

…, F Goebels, LZM Hu, S Chen, Y Zhang, SD Wierbowski… - Cell systems, 2020 - cell.com
Connectivity webs mediate the unique biology of the mammalian brain. Yet, while cell circuit
maps are increasingly available, knowledge of their underlying molecular networks remains …

Transcription imparts architecture, function and logic to enhancer units

ND Tippens, J Liang, AKY Leung, SD Wierbowski… - Nature …, 2020 - nature.com
Distal enhancers play pivotal roles in development and disease yet remain one of the least
understood regulatory elements. We used massively parallel reporter assays to perform …

[HTML][HTML] A 3D structural SARS-CoV-2–human interactome to explore genetic and drug perturbations

SD Wierbowski, S Liang, Y Liu, Y Chen, S Gupta… - Nature …, 2021 - nature.com
Emergence of new viral agents is driven by evolution of interactions between viral proteins
and host targets. For instance, increased infectivity of SARS-CoV-2 compared to SARS-CoV-…

[HTML][HTML] Extensive disruption of protein interactions by genetic variants across the allele frequency spectrum in human populations

R Fragoza, J Das, SD Wierbowski, J Liang… - Nature …, 2019 - nature.com
Each human genome carries tens of thousands of coding variants. The extent to which this
variation is functional and the mechanisms by which they exert their influence remains largely …

Cross‐docking benchmark for automated pose and ranking prediction of ligand binding

SD Wierbowski, BM Wingert, J Zheng… - Protein …, 2020 - Wiley Online Library
Significant efforts have been devoted in the last decade to improving molecular docking
techniques to predict both accurate binding poses and ranking affinities. Some shortcomings in …

Structure-based validation can drastically underestimate error rate in proteome-wide cross-linking mass spectrometry studies

K Yugandhar, TY Wang, SD Wierbowski… - Nature …, 2020 - nature.com
Thorough quality assessment of novel interactions identified by proteome-wide cross-linking
mass spectrometry (XL-MS) studies is critical. Almost all current XL-MS studies have …

A massively parallel barcoded sequencing pipeline enables generation of the first ORFeome and interactome map for rice

SD Wierbowski, TV Vo, P Falter-Braun… - Proceedings of the …, 2020 - National Acad Sciences
Systematic mappings of protein interactome networks have provided invaluable functional
information for numerous model organisms. Here we develop PCR-mediated Linkage of …

Extracting complementary insights from molecular phenotypes for prioritization of disease-associated mutations

SD Wierbowski, R Fragoza, S Liang, H Yu - Current opinion in systems …, 2018 - Elsevier
Rapid advances in next-generation sequencing technology have resulted in an explosion of
whole-exome/genome sequencing data, providing an unprecedented opportunity to identify …

A 3D structural interactome to explore the impact of evolutionary divergence, population variation, and small-molecule drugs on SARS-CoV-2-human protein-protein …

SD Wierbowski, S Liang, Y Chen, NM Andre, SM Lipkin… - bioRxiv, 2020 - biorxiv.org
The recent COVID-19 pandemic has sparked a global public health crisis. Vital to the
development of informed treatments for this disease is a comprehensive understanding of the …

A full-proteome, interaction-specific characterization of mutational hotspots across human cancers

S Chen, Y Liu, Y Zhang, SD Wierbowski… - Genome …, 2022 - genome.cshlp.org
Rapid accumulation of cancer genomic data has led to the identification of an increasing
number of mutational hotspots with uncharacterized significance. Here we present a …