Motivation Next-generation sequencing technology is generating a wealth of highly similar
genome sequences for many species, paving the way for a transition from single-genome to …

The quality of high-throughput next-generation sequencing data significantly influences the
performance and memory consumption of assembly and mapping algorithms. The most …

The ever-increasing number of sequenced genomes necessitates the development of
pangenomic approaches for comparative genomics. Introduced in 2016, PanTools is a platform …

Background Identification of homologous genes is fundamental to comparative genomics,
functional genomics and phylogenomics. Extensive public homology databases are of great …

In core logging, each joint set intersects borehole into some segments. In this research, it
has been shown that length of the borehole segments created by each joint set could be …

In this paper, an exhaustive algorithm for extracting structured motifs has been presented.
Structured motif is defined as an ordered set of highly-conserved over-presented patterns …

OSPF is the best-known intra-domain routing protocol which is employed all over the
internet. In this research, an optimization problem has been introduced for optimizing OSPF …

Background The availability of multiple, essentially complete genome sequences of prokaryotes
and eukaryotes spurred both the demand and the opportunity for the construction of an …

Comparative genomics investigates the genomic makeup of species to unravel their unique
variations and evolutionary relationships. High-throughput sequencing technologies have …

Background Homology is a key concept in both evolutionary biology and genomics. Detection
of homology is crucial in fields like the functional annotation of protein sequences and the …