Targeted m6A Reader Proteins To Study Epitranscriptomic Regulation of Single RNAs

S Rauch, C He, BC Dickinson - Journal of the American Chemical …, 2018 - ACS Publications
Post-transcriptional gene expression regulation of RNA has emerged as a key factor that
controls mammalian protein production. RNA trafficking, translation efficiency, and stability are …

[PDF][PDF] Programmable RNA-guided RNA effector proteins built from human parts

S Rauch, E He, M Srienc, H Zhou, Z Zhang… - Cell, 2019 - cell.com
Epitranscriptomic regulation controls information flow through the central dogma and provides
unique opportunities for manipulating cells at the RNA level. However, both fundamental …

Evolution of a reverse transcriptase to map N1-methyladenosine in human messenger RNA

H Zhou, S Rauch, Q Dai, X Cui, Z Zhang… - Nature …, 2019 - nature.com
Chemical modifications to messenger RNA are increasingly recognized as a critical regulatory
layer in the flow of genetic information, but quantitative tools to monitor RNA modifications …

[HTML][HTML] Fear extinction is regulated by the activity of long noncoding RNAs at the synapse

…, H Ren, M Musgrove, J Davies, S Rauch… - Nature …, 2023 - nature.com
Long noncoding RNAs (lncRNAs) represent a multidimensional class of regulatory molecules
that are involved in many aspects of brain function. Emerging evidence indicates that …

Synapse-enriched m6A-modified Malat1 interacts with the novel m6A reader, DPYSL2, and is required for fear-extinction memory

…, JWA Davies, G Kim, S Rauch… - Journal of …, 2023 - Soc Neuroscience
The RNA modification N 6 -methyladenosine (m 6 A) regulates the interaction between RNA
and various RNA binding proteins within the nucleus and other subcellular compartments …

Small molecule-inducible RNA-targeting systems for temporal control of RNA regulation

S Rauch, KA Jones, BC Dickinson - ACS central science, 2020 - ACS Publications
All aspects of mRNA lifetime and function, including its stability, translation into protein, and
trafficking through the cell, are tightly regulated through coordinated post-transcriptional …

[HTML][HTML] CASowary: CRISPR-Cas13 guide RNA predictor for transcript depletion

A Krohannon, M Srivastava, S Rauch, R Srivastava… - BMC genomics, 2022 - Springer
Background Recent discovery of the gene editing system - CRISPR (Clustered Regularly
Interspersed Short Palindromic Repeats) associated proteins (Cas), has resulted in its …

Programmable technologies to manipulate gene expression at the RNA level

H Liu, S Rauch, BC Dickinson - Current opinion in chemical biology, 2021 - Elsevier
RNA has long been an enticing therapeutic target, but is now garnering increased attention,
largely driven by clinical successes of RNA interference–based drugs. While gene …

Fear extinction is regulated by long noncoding RNA activity at the synapse

…, LJ Leighton, H Ren, M Musgrove, J Davies, S Rauch… - BioRxiv, 2022 - biorxiv.org
Long noncoding RNAs (lncRNAs) represent a multidimensional class of regulatory molecules
involved in many aspects of brain function. Emerging evidence indicates that lncRNAs are …

Expanding RNA editing toolkit using an IDR-based strategy

…, Z Jing, Y Yang, K Yan, J Wu, J Ge, S Rauch… - … Therapy-Nucleic Acids, 2023 - cell.com
RNA base editors should ideally be free of immunogenicity, compact, efficient and specific,
which has not been achieved for C>U editing. Here we first describe a compact C>U editor …