Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins
10.7554/eLife.27860.001 Recent functional, proteomic and ribosome profiling studies in
eukaryotes have concurrently demonstrated the translation of alternative open-reading frames (…
eukaryotes have concurrently demonstrated the translation of alternative open-reading frames (…
OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes
…, M Levesque, F Grenier, S Samandi… - Nucleic acids …, 2019 - academic.oup.com
Advances in proteomics and sequencing have highlighted many non-annotated open
reading frames (ORFs) in eukaryotic genomes. Genome annotations, cornerstones of today's …
reading frames (ORFs) in eukaryotic genomes. Genome annotations, cornerstones of today's …
[HTML][HTML] UBB pseudogene 4 encodes functional ubiquitin variants
ML Dubois, A Meller, S Samandi, M Brunelle… - Nature …, 2020 - nature.com
Pseudogenes are mutated copies of protein-coding genes that cannot be translated into
proteins, but a small subset of pseudogenes has been detected at the protein level. Although …
proteins, but a small subset of pseudogenes has been detected at the protein level. Although …
Newfound coding potential of transcripts unveils missing members of human protein communities
…, A Bruggeman-Gascon, S Samandi… - Genomics …, 2023 - academic.oup.com
Recent proteogenomic approaches have led to the discovery that regions of the transcriptome
previously annotated as non-coding regions [ie, untranslated regions (UTRs), open …
previously annotated as non-coding regions [ie, untranslated regions (UTRs), open …
Deep transcriptome annotation suggests that small and large proteins encoded in the same genes often cooperate
S Samandi, AV Roy, V Delcourt, JF Lucier, J Gagnon… - bioRxiv, 2017 - biorxiv.org
Recent studies in eukaryotes have demonstrated the translation of alternative open reading
frames (altORFs) in addition to annotated protein coding sequences (CDSs). We show that a …
frames (altORFs) in addition to annotated protein coding sequences (CDSs). We show that a …
PharML. Bind: pharmacologic machine learning for protein-ligand interactions
Is it feasible to create an analysis paradigm that can analyze and then accurately and quickly
predict known drugs from experimental data? PharML.Bind is a machine learning toolkit …
predict known drugs from experimental data? PharML.Bind is a machine learning toolkit …
[CITATION][C] Conception et applications de nanothermomètres programmables et quantitatifs en ADN
…, CJW Walton, DN Bernard, M Filteau, S Samandi…
[PDF][PDF] La coopération fonctionelle entre deux protéines codées par l'ARNm du gène SMCR7L/MiD51
A Roy - 2017 - core.ac.uk
… Un grand merci à Sondos Samandi pour avoir partagé avec moi ces deux ans de travail
pour créer un article dont nous pouvons être très fières. Un grand merci à Vivan Delcourt pour …
pour créer un article dont nous pouvons être très fières. Un grand merci à Vivan Delcourt pour …
[PDF][PDF] Caractérisation d'une deuxième protéine encodée dans le gène codant pour le récepteur B2 de la bradykinine
M Gagnon, PX Roucou, PF Gobeil Jr, PF Bachand… - 2021 - savoirs.usherbrooke.ca
Thèse présentée à la Faculté de médecine et des sciences de la santé en vue de l’obtention
du diplôme de philosophiae doctor (Ph. D.) en Biochimie, Faculté de médecine et des …
du diplôme de philosophiae doctor (Ph. D.) en Biochimie, Faculté de médecine et des …