[HTML][HTML] Benchmarking of alignment-free sequence comparison methods
Background Alignment-free (AF) sequence comparison is attracting persistent interest driven
by data-intensive applications. Hence, many AF procedures have been proposed in recent …
by data-intensive applications. Hence, many AF procedures have been proposed in recent …
[HTML][HTML] The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances
S Röhling, A Linne, J Schellhorn, M Hosseini… - Plos one, 2020 - journals.plos.org
We study the number N k of length-k word matches between pairs of evolutionarily related
DNA sequences, as a function of k. We show that the Jukes-Cantor distance between two …
DNA sequences, as a function of k. We show that the Jukes-Cantor distance between two …
[PDF][PDF] The number of spaced-word matches between two DNA sequences as a function of the underlying pattern weight
S Röhling, B Morgenstern - bioRxiv, 2019 - researchgate.net
We study the number Nk of (spaced) word matches between pairs of evolutionarily related
DNA sequences depending on the word length or pattern weight k, respectively. We show that…
DNA sequences depending on the word length or pattern weight k, respectively. We show that…
[PDF][PDF] Additional file
…, CA Leimeister, K Tang, T Dencker, AK Lau, S Röhling… - springernature.figshare.com
Figure S2. Comparison (tanglement) of test tree and reference tree of complete mitochondrial
genomes from 25 labroid fishes. The test tree is inferred by 9 alignment-free programs (…
genomes from 25 labroid fishes. The test tree is inferred by 9 alignment-free programs (…
[PDF][PDF] Alignment-free Phylogeny Reconstruction Based On Quartet Trees
T Dencker - 2020 - ediss.uni-goettingen.de
Traditional methods for phylogeny reconstruction are based on multiple sequence alignments
and character-based methods. This combination of computationally expensive methods …
and character-based methods. This combination of computationally expensive methods …
Cardiac lymphatics are heterogeneous in origin and respond to injury
L Klotz, S Norman, JM Vieira, M Masters, M Rohling… - Nature, 2015 - nature.com
The lymphatic vasculature is a blind-ended network crucial for tissue-fluid homeostasis,
immune surveillance and lipid absorption from the gut. Recent evidence has proposed an …
immune surveillance and lipid absorption from the gut. Recent evidence has proposed an …
[HTML][HTML] Regulatory pathways governing murine coronary vessel formation are dysregulated in the injured adult heart
S Payne, M Gunadasa-Rohling, A Neal… - Nature …, 2019 - nature.com
The survival of ischaemic cardiomyocytes after myocardial infarction (MI) depends on the
formation of new blood vessels. However, endogenous neovascularization is inefficient and …
formation of new blood vessels. However, endogenous neovascularization is inefficient and …
[HTML][HTML] Impact of a Low-Insulin-Stimulating Bread on Weight Development—A Real Life Randomised Controlled Trial
K Kempf, M Röhling, H Kolb, S Martin - Nutrients, 2023 - mdpi.com
The impact on body weight development is usually analysed by comparing different diet types.
Our approach was to change only one component, namely bread, common to most diets. …
Our approach was to change only one component, namely bread, common to most diets. …
[HTML][HTML] The cardiac lymphatic system stimulates resolution of inflammation following myocardial infarction
…, DN Barnette, M Gunadasa-Rohling… - The Journal of …, 2018 - Am Soc Clin Investig
Myocardial infarction (MI) arising from obstruction of the coronary circulation engenders
massive cardiomyocyte loss and replacement by non-contractile scar tissue, leading to …
massive cardiomyocyte loss and replacement by non-contractile scar tissue, leading to …
COVID‐19 crisis reduces free tropospheric ozone across the Northern Hemisphere
…, C Torres, O Garcia, AN Röhling… - Geophysical …, 2021 - Wiley Online Library
Throughout spring and summer 2020, ozone stations in the northern extratropics recorded
unusually low ozone in the free troposphere. From April to August, and from 1 to 8 kilometers …
unusually low ozone in the free troposphere. From April to August, and from 1 to 8 kilometers …