[HTML][HTML] Benchmarking of alignment-free sequence comparison methods

…, CA Leimeister, K Tang, T Dencker, AK Lau, S Röhling… - Genome biology, 2019 - Springer
Background Alignment-free (AF) sequence comparison is attracting persistent interest driven
by data-intensive applications. Hence, many AF procedures have been proposed in recent …

[HTML][HTML] The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances

S Röhling, A Linne, J Schellhorn, M Hosseini… - Plos one, 2020 - journals.plos.org
We study the number N k of length-k word matches between pairs of evolutionarily related
DNA sequences, as a function of k. We show that the Jukes-Cantor distance between two …

[PDF][PDF] The number of spaced-word matches between two DNA sequences as a function of the underlying pattern weight

S Röhling, B Morgenstern - bioRxiv, 2019 - researchgate.net
We study the number Nk of (spaced) word matches between pairs of evolutionarily related
DNA sequences depending on the word length or pattern weight k, respectively. We show that…

[PDF][PDF] Additional file

…, CA Leimeister, K Tang, T Dencker, AK Lau, S Röhling… - springernature.figshare.com
Figure S2. Comparison (tanglement) of test tree and reference tree of complete mitochondrial
genomes from 25 labroid fishes. The test tree is inferred by 9 alignment-free programs (…

[PDF][PDF] Alignment-free Phylogeny Reconstruction Based On Quartet Trees

T Dencker - 2020 - ediss.uni-goettingen.de
Traditional methods for phylogeny reconstruction are based on multiple sequence alignments
and character-based methods. This combination of computationally expensive methods …

Cardiac lymphatics are heterogeneous in origin and respond to injury

L Klotz, S Norman, JM Vieira, M Masters, M Rohling… - Nature, 2015 - nature.com
The lymphatic vasculature is a blind-ended network crucial for tissue-fluid homeostasis,
immune surveillance and lipid absorption from the gut. Recent evidence has proposed an …

[HTML][HTML] Regulatory pathways governing murine coronary vessel formation are dysregulated in the injured adult heart

S Payne, M Gunadasa-Rohling, A Neal… - Nature …, 2019 - nature.com
The survival of ischaemic cardiomyocytes after myocardial infarction (MI) depends on the
formation of new blood vessels. However, endogenous neovascularization is inefficient and …

[HTML][HTML] Impact of a Low-Insulin-Stimulating Bread on Weight Development—A Real Life Randomised Controlled Trial

K Kempf, M Röhling, H Kolb, S Martin - Nutrients, 2023 - mdpi.com
The impact on body weight development is usually analysed by comparing different diet types.
Our approach was to change only one component, namely bread, common to most diets. …

[HTML][HTML] The cardiac lymphatic system stimulates resolution of inflammation following myocardial infarction

…, DN Barnette, M Gunadasa-Rohling… - The Journal of …, 2018 - Am Soc Clin Investig
Myocardial infarction (MI) arising from obstruction of the coronary circulation engenders
massive cardiomyocyte loss and replacement by non-contractile scar tissue, leading to …

COVID‐19 crisis reduces free tropospheric ozone across the Northern Hemisphere

…, C Torres, O Garcia, AN Röhling… - Geophysical …, 2021 - Wiley Online Library
Throughout spring and summer 2020, ozone stations in the northern extratropics recorded
unusually low ozone in the free troposphere. From April to August, and from 1 to 8 kilometers …