User profiles for Soroor Hediyeh Zadeh

Soroor Hediyeh-zadeh

Institute of Computational Biology, Helmholtz Zentrum München
Verified email at helmholtz-muenchen.de
Cited by 1414

Blockade of the co-inhibitory molecule PD-1 unleashes ILC2-dependent antitumor immunity in melanoma

…, M Wang, A Pizzolla, Y Liao, S Hediyeh-Zadeh… - Nature …, 2021 - nature.com
Group 2 innate lymphoid cells (ILC2s) are essential to maintain tissue homeostasis. In cancer,
ILC2s can harbor both pro-tumorigenic and anti-tumorigenic functions, but we know little …

A gene signature predicting natural killer cell infiltration and improved survival in melanoma patients

…, A Anderson, F Hollande, S Hediyeh-Zadeh… - Cancer immunology …, 2019 - AACR
Natural killer (NK) cell activity is essential for initiating antitumor responses and may be
linked to immunotherapy success. NK cells and other innate immune components could be …

[HTML][HTML] Population-level integration of single-cell datasets enables multi-scale analysis across samples

C De Donno, S Hediyeh-Zadeh, AA Moinfar… - Nature …, 2023 - nature.com
The increasing generation of population-level single-cell atlases has the potential to link
sample metadata with cellular data. Constructing such references requires integration of …

[HTML][HTML] Biologically informed deep learning to query gene programs in single-cell atlases

…, S Rybakov, K Hrovatin, S Hediyeh-Zadeh… - Nature Cell …, 2023 - nature.com
The increasing availability of large-scale single-cell atlases has enabled the detailed
description of cell states. In parallel, advances in deep learning allow rapid analysis of newly …

[HTML][HTML] Combinatorial targeting by microRNAs co-ordinates post-transcriptional control of EMT

…, PA Gregory, M Foroutan, S Hediyeh-Zadeh… - Cell systems, 2018 - cell.com
MicroRNAs (miRNAs) are important post-transcriptional regulators of gene expression,
functioning in part by facilitating the degradation of target mRNAs. They have an established role …

Metastasis-entrained eosinophils enhance lymphocyte-mediated antitumor immunity

…, S Dulberg, L Beck, C Zhang, M Itan, S Hediyeh-Zadeh… - Cancer Research, 2021 - AACR
These findings demonstrate antitumor activities of eosinophils in the metastatic tumor
microenvironment, suggesting that harnessing eosinophil activity may be a viable clinical strategy …

Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR

PL Baldoni, Y Chen, S Hediyeh-Zadeh… - Nucleic Acids …, 2024 - academic.oup.com
Differential expression analysis of RNA-seq is one of the most commonly performed
bioinformatics analyses. Transcript-level quantifications are inherently more uncertain than gene-…

Molecular insight into targeting the NK cell immune response to cancer

…, S HediyehZadeh… - Immunology and cell …, 2018 - Wiley Online Library
Natural Killer ( NK ) cells have long been considered an important part of the anti‐tumor
immune response due to their potent cytolytic and cytokine‐secreting abilities. To date, a clear …

NK cell–derived GM-CSF potentiates inflammatory arthritis and is negatively regulated by CIS

…, T Kratina, L Dagley, S Hediyeh-Zadeh… - Journal of Experimental …, 2020 - rupress.org
Despite increasing recognition of the importance of GM-CSF in autoimmune disease, it
remains unclear how GM-CSF is regulated at sites of tissue inflammation. Using GM-CSF fate …

A transcriptional program for detecting TGFβ-induced EMT in cancer

M Foroutan, J Cursons, S Hediyeh-Zadeh… - Molecular Cancer …, 2017 - AACR
Most cancer deaths are due to metastasis, and epithelial-to-mesenchymal transition (EMT)
plays a central role in driving cancer cell metastasis. EMT is induced by different stimuli, …