User profiles for Soroor Hediyeh Zadeh
Soroor Hediyeh-zadehInstitute of Computational Biology, Helmholtz Zentrum München Verified email at helmholtz-muenchen.de Cited by 1414 |
Blockade of the co-inhibitory molecule PD-1 unleashes ILC2-dependent antitumor immunity in melanoma
Group 2 innate lymphoid cells (ILC2s) are essential to maintain tissue homeostasis. In cancer,
ILC2s can harbor both pro-tumorigenic and anti-tumorigenic functions, but we know little …
ILC2s can harbor both pro-tumorigenic and anti-tumorigenic functions, but we know little …
A gene signature predicting natural killer cell infiltration and improved survival in melanoma patients
…, A Anderson, F Hollande, S Hediyeh-Zadeh… - Cancer immunology …, 2019 - AACR
Natural killer (NK) cell activity is essential for initiating antitumor responses and may be
linked to immunotherapy success. NK cells and other innate immune components could be …
linked to immunotherapy success. NK cells and other innate immune components could be …
[HTML][HTML] Population-level integration of single-cell datasets enables multi-scale analysis across samples
C De Donno, S Hediyeh-Zadeh, AA Moinfar… - Nature …, 2023 - nature.com
The increasing generation of population-level single-cell atlases has the potential to link
sample metadata with cellular data. Constructing such references requires integration of …
sample metadata with cellular data. Constructing such references requires integration of …
[HTML][HTML] Biologically informed deep learning to query gene programs in single-cell atlases
The increasing availability of large-scale single-cell atlases has enabled the detailed
description of cell states. In parallel, advances in deep learning allow rapid analysis of newly …
description of cell states. In parallel, advances in deep learning allow rapid analysis of newly …
[HTML][HTML] Combinatorial targeting by microRNAs co-ordinates post-transcriptional control of EMT
MicroRNAs (miRNAs) are important post-transcriptional regulators of gene expression,
functioning in part by facilitating the degradation of target mRNAs. They have an established role …
functioning in part by facilitating the degradation of target mRNAs. They have an established role …
Metastasis-entrained eosinophils enhance lymphocyte-mediated antitumor immunity
…, S Dulberg, L Beck, C Zhang, M Itan, S Hediyeh-Zadeh… - Cancer Research, 2021 - AACR
These findings demonstrate antitumor activities of eosinophils in the metastatic tumor
microenvironment, suggesting that harnessing eosinophil activity may be a viable clinical strategy …
microenvironment, suggesting that harnessing eosinophil activity may be a viable clinical strategy …
Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR
PL Baldoni, Y Chen, S Hediyeh-Zadeh… - Nucleic Acids …, 2024 - academic.oup.com
Differential expression analysis of RNA-seq is one of the most commonly performed
bioinformatics analyses. Transcript-level quantifications are inherently more uncertain than gene-…
bioinformatics analyses. Transcript-level quantifications are inherently more uncertain than gene-…
Molecular insight into targeting the NK cell immune response to cancer
…, S Hediyeh‐Zadeh… - Immunology and cell …, 2018 - Wiley Online Library
Natural Killer ( NK ) cells have long been considered an important part of the anti‐tumor
immune response due to their potent cytolytic and cytokine‐secreting abilities. To date, a clear …
immune response due to their potent cytolytic and cytokine‐secreting abilities. To date, a clear …
NK cell–derived GM-CSF potentiates inflammatory arthritis and is negatively regulated by CIS
…, T Kratina, L Dagley, S Hediyeh-Zadeh… - Journal of Experimental …, 2020 - rupress.org
Despite increasing recognition of the importance of GM-CSF in autoimmune disease, it
remains unclear how GM-CSF is regulated at sites of tissue inflammation. Using GM-CSF fate …
remains unclear how GM-CSF is regulated at sites of tissue inflammation. Using GM-CSF fate …
A transcriptional program for detecting TGFβ-induced EMT in cancer
Most cancer deaths are due to metastasis, and epithelial-to-mesenchymal transition (EMT)
plays a central role in driving cancer cell metastasis. EMT is induced by different stimuli, …
plays a central role in driving cancer cell metastasis. EMT is induced by different stimuli, …