User profiles for Spencer L. Shorte

Spencer Shorte

Institut Pasteur Paris
Verified email at pasteur.fr
Cited by 11357

[HTML][HTML] TrackMate: An open and extensible platform for single-particle tracking

…, GD Reynolds, E Laplantine, SY Bednarek, SL Shorte… - Methods, 2017 - Elsevier
We present TrackMate, an open source Fiji plugin for the automated, semi-automated, and
manual tracking of single-particles. It offers a versatile and modular solution that works out of …

[HTML][HTML] Objective comparison of particle tracking methods

…, C Kervrann, F Waharte, JY Tinevez, SL Shorte… - Nature …, 2014 - nature.com
Particle tracking is of key importance for quantitative analysis of intracellular dynamic
processes from time-lapse microscopy image data. Because manually detecting and following …

Screening out irrelevant cell-based models of disease

…, P Östling, V Pietiäinen, LS Price, SL Shorte… - Nature reviews Drug …, 2016 - nature.com
The common and persistent failures to translate promising preclinical drug candidates into
clinical success highlight the limited effectiveness of disease models currently used in drug …

Imaging movement of malaria parasites during transmission by Anopheles mosquitoes

…, S Thiberge, JC Olivo‐Marin, SL Shorte… - Cellular …, 2004 - Wiley Online Library
Malaria is contracted when Plasmodium sporozoites are inoculated into the vertebrate host
during the blood meal of a mosquito. In infected mosquitoes, sporozoites are present in large …

Deep learning in image-based phenotypic drug discovery

D Krentzel, SL Shorte, C Zimmer - Trends in Cell Biology, 2023 - cell.com
Modern drug discovery approaches often use high-content imaging to systematically study
the effect on cells of large libraries of chemical compounds. By automatically screening …

[HTML][HTML] Phenotypic clustering: a novel method for microglial morphology analysis

…, S Simard, M Lemaire, B Plaud, SL Shorte… - Journal of …, 2016 - Springer
Background Microglial cells are tissue-resident macrophages of the central nervous system.
They are extremely dynamic, sensitive to their microenvironment and present a …

[HTML][HTML] MuscleJ: a high-content analysis method to study skeletal muscle with a new Fiji tool

…, D Briand, A Mazeraud, A Bouglé, SL Shorte… - Skeletal muscle, 2018 - Springer
Background Skeletal muscle has the capacity to adapt to environmental changes and
regenerate upon injury. To study these processes, most experimental methods use quantification …

[PDF][PDF] Shigella subverts the host recycling compartment to rupture its vacuole

…, A Weiner, N Aulner, C Schmitt, M Elbaum, SL Shorte… - Cell host & …, 2014 - cell.com
Shigella enters epithlial cells via internalization into a vacuole. Subsequent vacuolar membrane
rupture allows bacterial escape into the cytosol for replication and cell-to-cell spread. …

[HTML][HTML] Next-generation phenotypic screening in early drug discovery for infectious diseases

N Aulner, A Danckaert, JE Ihm, D Shum, SL Shorte - Trends in parasitology, 2019 - cell.com
Cell-based phenotypic screening has proven to be valuable, notably in recapitulating
relevant biological conditions, for example, the host cell/pathogen niche. However, the …

The SPI‐2 type III secretion system restricts motility of Salmonella‐containing vacuoles

AE Ramsden, LJ Mota, S Münter, SL Shorte… - Cellular …, 2007 - Wiley Online Library
Intracellular replication of Salmonella enterica occurs in membrane‐bound compartments,
called Salmonella‐containing vacuoles (SCVs). Following invasion of epithelial cells, most …