User profiles for Spencer L. Shorte
Spencer ShorteInstitut Pasteur Paris Verified email at pasteur.fr Cited by 11357 |
[HTML][HTML] TrackMate: An open and extensible platform for single-particle tracking
…, GD Reynolds, E Laplantine, SY Bednarek, SL Shorte… - Methods, 2017 - Elsevier
We present TrackMate, an open source Fiji plugin for the automated, semi-automated, and
manual tracking of single-particles. It offers a versatile and modular solution that works out of …
manual tracking of single-particles. It offers a versatile and modular solution that works out of …
[HTML][HTML] Objective comparison of particle tracking methods
Particle tracking is of key importance for quantitative analysis of intracellular dynamic
processes from time-lapse microscopy image data. Because manually detecting and following …
processes from time-lapse microscopy image data. Because manually detecting and following …
Screening out irrelevant cell-based models of disease
The common and persistent failures to translate promising preclinical drug candidates into
clinical success highlight the limited effectiveness of disease models currently used in drug …
clinical success highlight the limited effectiveness of disease models currently used in drug …
Imaging movement of malaria parasites during transmission by Anopheles mosquitoes
…, S Thiberge, JC Olivo‐Marin, SL Shorte… - Cellular …, 2004 - Wiley Online Library
Malaria is contracted when Plasmodium sporozoites are inoculated into the vertebrate host
during the blood meal of a mosquito. In infected mosquitoes, sporozoites are present in large …
during the blood meal of a mosquito. In infected mosquitoes, sporozoites are present in large …
Deep learning in image-based phenotypic drug discovery
Modern drug discovery approaches often use high-content imaging to systematically study
the effect on cells of large libraries of chemical compounds. By automatically screening …
the effect on cells of large libraries of chemical compounds. By automatically screening …
[HTML][HTML] Phenotypic clustering: a novel method for microglial morphology analysis
…, S Simard, M Lemaire, B Plaud, SL Shorte… - Journal of …, 2016 - Springer
Background Microglial cells are tissue-resident macrophages of the central nervous system.
They are extremely dynamic, sensitive to their microenvironment and present a …
They are extremely dynamic, sensitive to their microenvironment and present a …
[HTML][HTML] MuscleJ: a high-content analysis method to study skeletal muscle with a new Fiji tool
Background Skeletal muscle has the capacity to adapt to environmental changes and
regenerate upon injury. To study these processes, most experimental methods use quantification …
regenerate upon injury. To study these processes, most experimental methods use quantification …
[PDF][PDF] Shigella subverts the host recycling compartment to rupture its vacuole
Shigella enters epithlial cells via internalization into a vacuole. Subsequent vacuolar membrane
rupture allows bacterial escape into the cytosol for replication and cell-to-cell spread. …
rupture allows bacterial escape into the cytosol for replication and cell-to-cell spread. …
[HTML][HTML] Next-generation phenotypic screening in early drug discovery for infectious diseases
Cell-based phenotypic screening has proven to be valuable, notably in recapitulating
relevant biological conditions, for example, the host cell/pathogen niche. However, the …
relevant biological conditions, for example, the host cell/pathogen niche. However, the …
The SPI‐2 type III secretion system restricts motility of Salmonella‐containing vacuoles
Intracellular replication of Salmonella enterica occurs in membrane‐bound compartments,
called Salmonella‐containing vacuoles (SCVs). Following invasion of epithelial cells, most …
called Salmonella‐containing vacuoles (SCVs). Following invasion of epithelial cells, most …