Tellurium: an extensible python-based modeling environment for systems and synthetic biology
Here we present Tellurium, a Python-based environment for model building, simulation, and
analysis that facilitates reproducibility of models in systems and synthetic biology. Tellurium …
analysis that facilitates reproducibility of models in systems and synthetic biology. Tellurium …
[HTML][HTML] Tellurium notebooks—an environment for reproducible dynamical modeling in systems biology
The considerable difficulty encountered in reproducing the results of published dynamical
models limits validation, exploration and reuse of this increasingly large biomedical research …
models limits validation, exploration and reuse of this increasingly large biomedical research …
Applying a patient-specific bio-mathematical model of glioma growth to develop virtual [18F]-FMISO-PET images
S Gu, G Chakraborty, K Champley… - … and biology: a …, 2012 - academic.oup.com
Glioblastoma multiforme (GBM) is a class of primary brain tumours characterized by their
ability to rapidly proliferate and diffusely infiltrate surrounding brain tissue. The aggressive …
ability to rapidly proliferate and diffusely infiltrate surrounding brain tissue. The aggressive …
[HTML][HTML] Recent advances in biomedical simulations: a manifesto for model engineering
Biomedical simulations are widely used to understand disease, engineer cells, and model
cellular processes. In this article, we explore how to improve the quality of biomedical …
cellular processes. In this article, we explore how to improve the quality of biomedical …
Modeling diffusely invading brain tumors an individualized approach to quantifying glioma evolution and response to therapy
Gliomas are highly aggressive primary brain tumors that extensively invade the surrounding
normal tissue prior to the onset of symptoms. They are classified from low to high grade (I–IV…
normal tissue prior to the onset of symptoms. They are classified from low to high grade (I–IV…
Tellurium notebooks-an environment for dynamical model development, reproducibility, and reuse
The considerable difficulty encountered in reproducing the results of published dynamical
models limits validation, exploration and reuse of this increasingly large biomedical research …
models limits validation, exploration and reuse of this increasingly large biomedical research …
[BOOK][B] Computational Systems Biology: Chapter 8. Standards, Platforms, and Applications
With the sequencing of the human genome, it has become apparent that systems biology,
the understanding of cellular networks through dynamical analysis is becoming an important …
the understanding of cellular networks through dynamical analysis is becoming an important …
[PDF][PDF] Russell Rockne, Ellsworth C. Alvord Jr., Mindy Szeto, Stanley Gu
G Chakraborty, KR Swanson - academia.edu
Gliomas are highly aggressive primary brain tumors that extensively invade the surrounding
normal tissue prior to the onset of symptoms. They are classified from low to high grade (I–IV…
normal tissue prior to the onset of symptoms. They are classified from low to high grade (I–IV…
▪ Bridging from Multiscale Modeling to Practical Clinical Applications in the Study of Human Gliomas
Modern radiology offers imaging techniques such as magnetic resonance imaging (MRI)
and positron emission tomography (PET) that allow noninvasive detection of brain tumor …
and positron emission tomography (PET) that allow noninvasive detection of brain tumor …
Searsville Sediment Experiment: What is the ideal agricultural soil?
J Leal, D Lo, N Patel, S Gu - AGU Fall Meeting Abstracts, 2014 - ui.adsabs.harvard.edu
The purpose of this experiment is to decide whether or not the sediment located within
Searsville Dam at the Jasper Ridge Biological Preserve is well suited for agricultural soil. By …
Searsville Dam at the Jasper Ridge Biological Preserve is well suited for agricultural soil. By …