Contextualizing context for synthetic biology–identifying causes of failure of synthetic biological systems

S Cardinale, AP Arkin - Biotechnology journal, 2012 - Wiley Online Library
Despite the efforts that bioengineers have exerted in designing and constructing biological
processes that function according to a predetermined set of rules, their operation remains …

[HTML][HTML] Inactivation of a human kinetochore by specific targeting of chromatin modifiers

M Nakano, S Cardinale, VN Noskov, R Gassmann… - Developmental cell, 2008 - cell.com
We have used a human artificial chromosome (HAC) to manipulate the epigenetic state of
chromatin within an active kinetochore. The HAC has a dimeric α-satellite repeat containing …

[HTML][HTML] Distinct sequence motifs within the 68-kDa subunit of cleavage factor Im mediate RNA binding, protein-protein interactions, and subcellular localization

S Dettwiler, C Aringhieri, S Cardinale, W Keller… - Journal of Biological …, 2004 - ASBMB
Cleavage factor I m (CF I m ) is required for the first step in pre-mRNA 3′-end processing
and can be reconstituted in vitro from its heterologously expressed 25- and 68-kDa subunits. …

Deconstructing Survivin: comprehensive genetic analysis of Survivin function by conditional knockout in a vertebrate cell line

Z Yue, A Carvalho, Z Xu, X Yuan, S Cardinale… - The Journal of cell …, 2008 - rupress.org
Survivin is a key cellular protein thought to function in apoptotic regulation, mitotic progression,
or possibly both. In this study, we describe the isolation of two conditional knockouts of …

[PDF][PDF] Effects of genetic variation on the E. coli host-circuit interface

S Cardinale, MP Joachimiak, AP Arkin - Cell reports, 2013 - cell.com
Predictable operation of engineered biological circuitry requires the knowledge of host factors
that compete or interfere with designed function. Here, we perform a detailed analysis of …

Hierarchical inactivation of a synthetic human kinetochore by a chromatin modifier

S Cardinale, JH Bergmann, D Kelly… - Molecular biology of …, 2009 - Am Soc Cell Biol
We previously used a human artificial chromosome (HAC) with a synthetic kinetochore that
could be targeted with chromatin modifiers fused to tetracycline repressor to show that …

Subnuclear localization and dynamics of the Pre-mRNA 3′ end processing factor mammalian cleavage factor I 68-kDa subunit

S Cardinale, B Cisterna, P Bonetti… - Molecular biology of …, 2007 - Am Soc Cell Biol
Mammalian cleavage factor I (CF I m ) is an essential factor that is required for the first step
in pre-mRNA 3′ end processing. Here, we characterize CF I m 68 subnuclear distribution …

Mammalian pre-mRNA 3′ End Processing Factor CF Im68 Functions in mRNA Export

…, C Aringhieri, S Vivarelli, S Cardinale… - Molecular biology of …, 2009 - Am Soc Cell Biol
Export of mRNA from the nucleus is linked to proper processing and packaging into
ribonucleoprotein complexes. Although several observations indicate a coupling between mRNA 3…

[PDF][PDF] Genetic-metabolic coupling for targeted metabolic engineering

S Cardinale, FG Tueros, MOA Sommer - Cell Reports, 2017 - cell.com
Production of chemicals in microbes often employs potent biosynthetic enzymes, which can
interact with the microbial native metabolism to affect cell fitness and product yield. However, …

[HTML][HTML] Host Genome–Metagenome Analyses Using Combinatorial Network Methods Reveal Key Metagenomic and Host Genetic Features for Methane Emission …

S Cardinale, HN Kadarmideen - Frontiers in Genetics, 2022 - frontiersin.org
Cattle production is one of the key contributors to global warming due to methane emission,
which is a by-product of converting feed stuff into milk and meat for human consumption. …