User profiles for Stephen J. Salipante

Stephen J. Salipante

Professor of Laboratory Medicine and Pathology, University of Washington
Verified email at uw.edu
Cited by 8851

Classification and characterization of microsatellite instability across 18 cancer types

RJ Hause, CC Pritchard, J Shendure, SJ Salipante - Nature medicine, 2016 - nature.com
Microsatellite instability (MSI), the spontaneous loss or gain of nucleotides from repetitive
DNA tracts, is a diagnostic phenotype for gastrointestinal, endometrial, and colorectal tumors, …

Genetic mechanisms of immune evasion in colorectal cancer

…, C Puig-Saus, EH Quist, BJ Raphael, SJ Salipante… - Cancer discovery, 2018 - AACR
To understand the genetic drivers of immune recognition and evasion in colorectal cancer,
we analyzed 1,211 colorectal cancer primary tumor samples, including 179 classified as …

Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation

…, SJ Salipante, BJ O'Roak, J Shendure - Genome …, 2013 - genome.cshlp.org
The detection and quantification of genetic heterogeneity in populations of cells is fundamentally
important to diverse fields, ranging from microbial evolution to human cancer genetics. …

Microsatellite instability detection by next generation sequencing

SJ Salipante, SM Scroggins, HL Hampel… - Clinical …, 2014 - academic.oup.com
BACKGROUND Microsatellite instability (MSI) is a useful phenotype in cancer diagnosis
and prognosis. Nevertheless, methods to detect MSI status from next generation DNA …

Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling

SJ Salipante, T Kawashima, C Rosenthal… - Applied and …, 2014 - Am Soc Microbiol
High-throughput sequencing of the taxonomically informative 16S rRNA gene provides a
powerful approach for exploring microbial diversity. Here we compare the performances of two …

Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology

SJ Salipante, DJ SenGupta, LA Cummings… - Journal of clinical …, 2015 - Am Soc Microbiol
Nosocomial infections pose a significant threat to patient health; however, the gold standard
laboratory method for determining bacterial relatedness (pulsed-field gel electrophoresis […

Exome sequencing identifies a spectrum of mutation frequencies in advanced and lethal prostate cancers

…, I Coleman, SB Ng, SJ Salipante… - Proceedings of the …, 2011 - National Acad Sciences
To catalog protein-altering mutations that may drive the development of prostate cancers
and their progression to metastatic disease systematically, we performed whole-exome …

[HTML][HTML] Complex MSH2 and MSH6 mutations in hypermutated microsatellite unstable advanced prostate cancer

…, C Smith, I Coleman, SJ Salipante, J Milbank… - Nature …, 2014 - nature.com
A hypermutated subtype of advanced prostate cancer was recently described, but prevalence
and mechanisms have not been well-characterized. Here we find that 12% (7 of 60) of …

[HTML][HTML] Validation and implementation of targeted capture and sequencing for the detection of actionable mutation, copy number variation, and gene rearrangement …

CC Pritchard, SJ Salipante, K Koehler, C Smith… - The Journal of Molecular …, 2014 - Elsevier
Recent years have seen development and implementation of anticancer therapies targeted
to particular gene mutations, but methods to assay clinical cancer specimens in a …

Neutrophil elastase in cyclic and severe congenital neutropenia

…, B Korkmaz, HH Lee, ME Mealiffe, SJ Salipante - Blood, 2007 - ashpublications.org
Mutations in ELA2 encoding the neutrophil granule protease, neutrophil elastase (NE), are
the major cause of the 2 main forms of hereditary neutropenia, cyclic neutropenia and severe …