User profiles for Stephen J. Salipante
Stephen J. SalipanteProfessor of Laboratory Medicine and Pathology, University of Washington Verified email at uw.edu Cited by 8851 |
Classification and characterization of microsatellite instability across 18 cancer types
Microsatellite instability (MSI), the spontaneous loss or gain of nucleotides from repetitive
DNA tracts, is a diagnostic phenotype for gastrointestinal, endometrial, and colorectal tumors, …
DNA tracts, is a diagnostic phenotype for gastrointestinal, endometrial, and colorectal tumors, …
Genetic mechanisms of immune evasion in colorectal cancer
…, C Puig-Saus, EH Quist, BJ Raphael, SJ Salipante… - Cancer discovery, 2018 - AACR
To understand the genetic drivers of immune recognition and evasion in colorectal cancer,
we analyzed 1,211 colorectal cancer primary tumor samples, including 179 classified as …
we analyzed 1,211 colorectal cancer primary tumor samples, including 179 classified as …
Single molecule molecular inversion probes for targeted, high-accuracy detection of low-frequency variation
The detection and quantification of genetic heterogeneity in populations of cells is fundamentally
important to diverse fields, ranging from microbial evolution to human cancer genetics. …
important to diverse fields, ranging from microbial evolution to human cancer genetics. …
Microsatellite instability detection by next generation sequencing
SJ Salipante, SM Scroggins, HL Hampel… - Clinical …, 2014 - academic.oup.com
BACKGROUND Microsatellite instability (MSI) is a useful phenotype in cancer diagnosis
and prognosis. Nevertheless, methods to detect MSI status from next generation DNA …
and prognosis. Nevertheless, methods to detect MSI status from next generation DNA …
Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling
High-throughput sequencing of the taxonomically informative 16S rRNA gene provides a
powerful approach for exploring microbial diversity. Here we compare the performances of two …
powerful approach for exploring microbial diversity. Here we compare the performances of two …
Application of whole-genome sequencing for bacterial strain typing in molecular epidemiology
SJ Salipante, DJ SenGupta, LA Cummings… - Journal of clinical …, 2015 - Am Soc Microbiol
Nosocomial infections pose a significant threat to patient health; however, the gold standard
laboratory method for determining bacterial relatedness (pulsed-field gel electrophoresis […
laboratory method for determining bacterial relatedness (pulsed-field gel electrophoresis […
Exome sequencing identifies a spectrum of mutation frequencies in advanced and lethal prostate cancers
…, I Coleman, SB Ng, SJ Salipante… - Proceedings of the …, 2011 - National Acad Sciences
To catalog protein-altering mutations that may drive the development of prostate cancers
and their progression to metastatic disease systematically, we performed whole-exome …
and their progression to metastatic disease systematically, we performed whole-exome …
[HTML][HTML] Complex MSH2 and MSH6 mutations in hypermutated microsatellite unstable advanced prostate cancer
…, C Smith, I Coleman, SJ Salipante, J Milbank… - Nature …, 2014 - nature.com
A hypermutated subtype of advanced prostate cancer was recently described, but prevalence
and mechanisms have not been well-characterized. Here we find that 12% (7 of 60) of …
and mechanisms have not been well-characterized. Here we find that 12% (7 of 60) of …
[HTML][HTML] Validation and implementation of targeted capture and sequencing for the detection of actionable mutation, copy number variation, and gene rearrangement …
CC Pritchard, SJ Salipante, K Koehler, C Smith… - The Journal of Molecular …, 2014 - Elsevier
Recent years have seen development and implementation of anticancer therapies targeted
to particular gene mutations, but methods to assay clinical cancer specimens in a …
to particular gene mutations, but methods to assay clinical cancer specimens in a …
Neutrophil elastase in cyclic and severe congenital neutropenia
…, B Korkmaz, HH Lee, ME Mealiffe, SJ Salipante - Blood, 2007 - ashpublications.org
Mutations in ELA2 encoding the neutrophil granule protease, neutrophil elastase (NE), are
the major cause of the 2 main forms of hereditary neutropenia, cyclic neutropenia and severe …
the major cause of the 2 main forms of hereditary neutropenia, cyclic neutropenia and severe …