User profiles for Stuart J Macdonald

Stuart J Macdonald

Professor of Genetics, University of Kansas
Verified email at ku.edu
Cited by 2736

[HTML][HTML] Genome-wide transcript profiles in aging and calorically restricted Drosophila melanogaster

SD Pletcher, SJ Macdonald, R Marguerie, U Certa… - Current Biology, 2002 - cell.com
Background: We characterized RNA transcript levels for the whole Drosophila genome
during normal aging. We compared age-dependent profiles from animals aged under full-nutrient …

Genetic dissection of a model complex trait using the Drosophila Synthetic Population Resource

…, S Sen, KW Broman, AD Long, SJ Macdonald - Genome …, 2012 - genome.cshlp.org
Genetic dissection of complex, polygenic trait variation is a key goal of medical and
evolutionary genetics. Attempts to identify genetic variants underlying complex traits have been …

Properties and power of the Drosophila Synthetic Population Resource for the routine dissection of complex traits

EG King, SJ Macdonald, AD Long - Genetics, 2012 - academic.oup.com
The Drosophila Synthetic Population Resource (DSPR) is a newly developed multifounder
advanced intercross panel consisting of >1600 recombinant inbred lines (RILs) designed for …

[HTML][HTML] Structural variants exhibit widespread allelic heterogeneity and shape variation in complex traits

M Chakraborty, JJ Emerson, SJ Macdonald… - Nature …, 2019 - nature.com
It has been hypothesized that individually-rare hidden structural variants (SVs) could account
for a significant fraction of variation in complex traits. Here we identified more than 20,000 …

Abundance and Distribution of Transposable Elements in Two Drosophila QTL Mapping Resources

JM Cridland, SJ Macdonald, AD Long… - … biology and evolution, 2013 - academic.oup.com
Here we present computational machinery to efficiently and accurately identify transposable
element (TE) insertions in 146 next-generation sequenced inbred strains of Drosophila …

[PDF][PDF] Selection and evaluation of tagging SNPs in the neuronal-sodium-channel gene SCN1A: implications for linkage-disequilibrium gene mapping

ME Weale, C Depondt, SJ Macdonald, A Smith… - The American Journal of …, 2003 - cell.com
Association studies are widely seen as the most promising approach for finding polymorphisms
that influence genetically complex traits, such as common diseases and responses to …

Genome sequence of herpes simplex virus 1 strain KOS

SJ Macdonald, HH Mostafa, LA Morrison, DJ Davido - 2012 - Am Soc Microbiol
Herpes simplex virus type 1 (HSV-1) strain KOS has been extensively used in many studies
to examine HSV-1 replication, gene expression, and pathogenesis. Notably, strain KOS is …

Dissecting complex traits using the Drosophila synthetic population resource

AD Long, SJ Macdonald, EG King - Trends in Genetics, 2014 - cell.com
For most complex traits we have a poor understanding of the positions, phenotypic effects,
and population frequencies of the underlying genetic variants contributing to their variation. …

A quantitative genetic analysis of male sexual traits distinguishing the sibling species Drosophila simulans and D. sechellia

SJ Macdonald, DB Goldstein - Genetics, 1999 - academic.oup.com
A quantitative trait locus (QTL) genetic analysis of morphological and reproductive traits
distinguishing the sibling species Drosophila simulans and D. sechellia was carried out in a …

[HTML][HTML] Genetic Dissection of the Drosophila melanogaster Female Head Transcriptome Reveals Widespread Allelic Heterogeneity

…, CL McNeil, AD Long, SJ Macdonald - PLoS …, 2014 - journals.plos.org
Modern genetic mapping is plagued by the “missing heritability” problem, which refers to the
discordance between the estimated heritabilities of quantitative traits and the variance …