[HTML][HTML] Expanded encyclopaedias of DNA elements in the human and mouse genomes

…, JC Rivera-Mulia, J Rozowsky, J Zhang, SB Chhetri… - Nature, 2020 - nature.com
The human and mouse genomes contain instructions that specify RNAs and proteins and
govern the timing, magnitude, and cellular context of their production. To better delineate these …

[HTML][HTML] Occupancy maps of 208 chromatin-associated proteins in one human cell type

EC Partridge, SB Chhetri, JW Prokop, RC Ramaker… - Nature, 2020 - nature.com
Transcription factors are DNA-binding proteins that have key roles in gene regulation 1 , 2 .
Genome-wide occupancy maps of transcriptional regulators are important for understanding …

Characterization of coding/noncoding variants for SHROOM3 in patients with CKD

…, NC Yeo, C Ottmann, SB Chhetri… - Journal of the …, 2018 - journals.lww.com
Background Interpreting genetic variants is one of the greatest challenges impeding analysis
of rapidly increasing volumes of genomic data from patients. For example, SHROOM3 is an …

[HTML][HTML] sn-spMF: matrix factorization informs tissue-specific genetic regulation of gene expression

Y He, SB Chhetri, M Arvanitis, K Srinivasan, F Aguet… - Genome biology, 2020 - Springer
Genetic regulation of gene expression, revealed by expression quantitative trait loci (eQTLs),
exhibits complex patterns of tissue-specific effects. Characterization of these patterns may …

[PDF][PDF] The EN-TEx resource of multi-tissue personal epigenomes & variant-impact models

…, S Banskota, GB Corona, S Chee, SB Chhetri… - Cell, 2023 - cell.com
Understanding how genetic variants impact molecular phenotypes is a key goal of functional
genomics, currently hindered by reliance on a single haploid reference genome. Here, we …

[HTML][HTML] The complex, dynamic SpliceOme of the small GTPase transcripts altered by technique, sex, genetics, tissue specificity, and RNA base editing

…, CP Bupp, S Rajasekaran, X Li, SB Chhetri… - Frontiers in Cell and …, 2022 - frontiersin.org
The small GTPase family is well-studied in cancer and cellular physiology. With 162 annotated
human genes, the family has a broad expression throughout cells of the body. Members …

[HTML][HTML] Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes

…, JC Rivera-Mulia, J Rozowsky, J Zhang, SB Chhetri… - Nature, 2022 - nature.com
… Charles B. Epstein … Surya B. Chhetri

[HTML][HTML] Transcriptional analysis of the multiple Sry genes and developmental program at the onset of testis differentiation in the rat

JW Prokop, SB Chhetri, JE van Veen, X Chen… - Biology of sex …, 2020 - Springer
Background The commonly used laboratory rat, Rattus norvegicus, is unique in having multiple
Sry gene copies found on the Y chromosome, with different copies encoding amino acid …

[HTML][HTML] Sources of gene expression variation in a globally diverse human cohort

DJ Taylor, SB Chhetri, MG Tassia, A Biddanda, A Battle… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Genetic variation influencing gene expression and splicing is a key source of phenotypic
diversity. Though invaluable, studies investigating these links in humans have been strongly …

Ethnopharmacological survey, Phytochemical screening and Antibacterial activity measurements of high altitude medicinal plants of Nepal: A bioprospecting …

J Lamichhane, SB Chhetri, M Bhandari, S Pokhrel… - 2014 - nopr.niscpr.res.in
The ethnopharmacological survey was undertaken to collect information about the use of
seven most used medicinal plants, viz. Gentiana depressa D. Don, Rhododendron setosum D. …