User profiles for Surya Saha
Surya SahaBoyce Thompson Institute, Seven Bridges Verified email at cornell.edu Cited by 3227 |
[HTML][HTML] Survey of Endosymbionts in the Diaphorina citri Metagenome and Assembly of a Wolbachia wDi Draft Genome
Diaphorina citri (Hemiptera: Psyllidae), the Asian citrus psyllid, is the insect vector of Ca.
Liberibacter asiaticus, the causal agent of citrus greening disease. Sequencing of the D. citri …
Liberibacter asiaticus, the causal agent of citrus greening disease. Sequencing of the D. citri …
[HTML][HTML] Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding
…, C Jiao, S Stravoravdis, PS Hosmani, S Saha… - Nature …, 2020 - nature.com
Solanum pimpinellifolium (SP) is the wild progenitor of cultivated tomato. Because of its
remarkable stress tolerance and intense flavor, SP has been used as an important germplasm …
remarkable stress tolerance and intense flavor, SP has been used as an important germplasm …
The Sol Genomics Network (SGN)—from genotype to phenotype to breeding
The Sol Genomics Network (SGN, http://solgenomics.net ) is a web portal with genomic and
phenotypic data, and analysis tools for the Solanaceae family and close relatives. SGN hosts …
phenotypic data, and analysis tools for the Solanaceae family and close relatives. SGN hosts …
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community
S Saha, PS Hosmani, K Villalobos-Ayala, S Miller… - Database, 2017 - academic.oup.com
The Asian citrus psyllid (Diaphorina citri Kuwayama) is the insect vector of the bacterium
Candidatus Liberibacter asiaticus (CLas), the pathogen associated with citrus Huanglongbing (…
Candidatus Liberibacter asiaticus (CLas), the pathogen associated with citrus Huanglongbing (…
[HTML][HTML] Critical assessment of metagenome interpretation—a benchmark of metagenomics software
Methods for assembly, taxonomic profiling and binning are key to interpreting metagenome
data, but a lack of consensus about benchmarking complicates performance assessment. …
data, but a lack of consensus about benchmarking complicates performance assessment. …
[HTML][HTML] Characterization of the Asian citrus psyllid transcriptome
The Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Psyllidae) is a vector for the
causative agents of Huanglongbing, which threatens citrus production worldwide. This …
causative agents of Huanglongbing, which threatens citrus production worldwide. This …
[HTML][HTML] Graph pangenome captures missing heritability and empowers tomato breeding
Missing heritability in genome-wide association studies defines a major problem in genetic
analyses of complex biological traits 1 , 2 . The solution to this problem is to identify all causal …
analyses of complex biological traits 1 , 2 . The solution to this problem is to identify all causal …
Empirical comparison of ab initio repeat finding programs
S Saha, S Bridges, ZV Magbanua… - Nucleic acids …, 2008 - academic.oup.com
Identification of dispersed repetitive elements can be difficult, especially when elements share
little or no homology with previously described repeats. Consequently, a growing number …
little or no homology with previously described repeats. Consequently, a growing number …
An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps
The original Heinz 1706 reference genome was produced by a large team of scientists from
across the globe from a variety of input sources that included 454 sequences in addition to …
across the globe from a variety of input sources that included 454 sequences in addition to …
[HTML][HTML] Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter …
Huanglongbing, or citrus greening disease, is an economically devastating bacterial
disease of citrus. It is associated with infection by the gram-negative bacterium Candidatus …
disease of citrus. It is associated with infection by the gram-negative bacterium Candidatus …