User profiles for Surya Saha

Surya Saha

Boyce Thompson Institute, Seven Bridges
Verified email at cornell.edu
Cited by 3227

[HTML][HTML] Survey of Endosymbionts in the Diaphorina citri Metagenome and Assembly of a Wolbachia wDi Draft Genome

S Saha, WB Hunter, J Reese, JK Morgan… - PloS one, 2012 - journals.plos.org
Diaphorina citri (Hemiptera: Psyllidae), the Asian citrus psyllid, is the insect vector of Ca.
Liberibacter asiaticus, the causal agent of citrus greening disease. Sequencing of the D. citri …

[HTML][HTML] Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding

…, C Jiao, S Stravoravdis, PS Hosmani, S Saha… - Nature …, 2020 - nature.com
Solanum pimpinellifolium (SP) is the wild progenitor of cultivated tomato. Because of its
remarkable stress tolerance and intense flavor, SP has been used as an important germplasm …

The Sol Genomics Network (SGN)—from genotype to phenotype to breeding

…, N Menda, JD Edwards, S Saha… - Nucleic acids …, 2015 - academic.oup.com
The Sol Genomics Network (SGN, http://solgenomics.net ) is a web portal with genomic and
phenotypic data, and analysis tools for the Solanaceae family and close relatives. SGN hosts …

Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community

S Saha, PS Hosmani, K Villalobos-Ayala, S Miller… - Database, 2017 - academic.oup.com
The Asian citrus psyllid (Diaphorina citri Kuwayama) is the insect vector of the bacterium
Candidatus Liberibacter asiaticus (CLas), the pathogen associated with citrus Huanglongbing (…

[HTML][HTML] Critical assessment of metagenome interpretation—a benchmark of metagenomics software

…, GGZ Silva, DA Cuevas, RA Edwards, S Saha… - Nature …, 2017 - nature.com
Methods for assembly, taxonomic profiling and binning are key to interpreting metagenome
data, but a lack of consensus about benchmarking complicates performance assessment. …

[HTML][HTML] Characterization of the Asian citrus psyllid transcriptome

J Reese, MK Christenson, N Leng, S Saha… - Journal of …, 2014 - ncbi.nlm.nih.gov
The Asian citrus psyllid, Diaphorina citri Kuwayama (Hemiptera: Psyllidae) is a vector for the
causative agents of Huanglongbing, which threatens citrus production worldwide. This …

[HTML][HTML] Graph pangenome captures missing heritability and empowers tomato breeding

…, Y Fang, K Wu, J Zhang, H Lyu, T Lin, Q Gao, S Saha… - Nature, 2022 - nature.com
Missing heritability in genome-wide association studies defines a major problem in genetic
analyses of complex biological traits 1 , 2 . The solution to this problem is to identify all causal …

Empirical comparison of ab initio repeat finding programs

S Saha, S Bridges, ZV Magbanua… - Nucleic acids …, 2008 - academic.oup.com
Identification of dispersed repetitive elements can be difficult, especially when elements share
little or no homology with previously described repeats. Consequently, a growing number …

An improved de novo assembly and annotation of the tomato reference genome using single-molecule sequencing, Hi-C proximity ligation and optical maps

…, S Peters, Z Fei, JJ Giovannoni, LA Mueller, S Saha - biorxiv, 2019 - biorxiv.org
The original Heinz 1706 reference genome was produced by a large team of scientists from
across the globe from a variety of input sources that included 454 sequences in addition to …

[HTML][HTML] Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter …

A Kruse, S Fattah-Hosseini, S Saha, R Johnson… - PloS one, 2017 - journals.plos.org
Huanglongbing, or citrus greening disease, is an economically devastating bacterial
disease of citrus. It is associated with infection by the gram-negative bacterium Candidatus …