PIQED: automated identification and quantification of protein modifications from DIA-MS data

JG Meyer, S Mukkamalla, H Steen, AI Nesvizhskii… - Nature …, 2017 - nature.com
Methods. The interactive dot plot and heat map viewer of ProHits-viz enables visualization
of the results from the dot plot and correlation tools directly in the browser. For large images, …

DIA-Pipe: Identification and Quantification of Post-Translational Modifications using exclusively Data-Independent Acquisition

JG Meyer, S Mukkamalla, AK D'Souza, AI Nesvizhskii… - bioRxiv, 2017 - biorxiv.org
Label-free quantification using data-independent acquisition (DIA) is a robust method for
deep and accurate proteome quantification 1 , 2 . However, when lacking a pre-existing …

[HTML][HTML] Nutrient Regulation of Transcription & Signaling by O-GlcNAc: Fundamental Roles in Diabetes, Neurodegeneration and Cancer

G Hart - Molecular & Cellular Proteomics, 2017 - ASBMB
O-GlcNAc cycles on and off thousands of nucleocytoplasmic proteins and has extensive
crosstalk with protein phosphorylation, both at the site level and by reciprocal regulation of their …

Nutrient Regulation of Transcription & Signaling by O-GlcNAc: Fundamental Roles in Diabetes, Neurodegeneration and Cancer

G Hart - europepmc.org
O-GlcNAc cycles on and off thousands of nucleocytoplasmic proteins and has extensive
crosstalk with protein phosphorylation, both at the site level and by reciprocal regulation of their …

Playing Cricket: India's Soft Power, Nation Branding and Future Prospects

SK Das, AC Borah, S Mallick - India Quarterly, 2024 - journals.sagepub.com
The growing interdependence among the nations, the advancement of science and technology
and the impact of globalisation have made it less useful for nations to rely predominantly …

[CITATION][C] Library-Free DIA for PTM Identification and Quantification using PIQED: Application to Multiple Diet-Induced Acylation Changes in Mouse Liver …

…, GX Wang, S Mukkamalla… - MOLECULAR …, 2017 - AMER SOC BIOCHEMISTRY …