The design, implementation, and capabilities of an extensible visualization system, UCSF
Chimera, are discussed. Chimera is segmented into a core that provides basic services and …

UCSF ChimeraX is the next‐generation interactive visualization program from the Resource
for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX …

UCSF ChimeraX is next‐generation software for the visualization and analysis of molecular
structures, density maps, 3D microscopy, and associated data. It addresses challenges in …

We describe a method to explore geometrically feasible alignments of ligands and receptors
of known structure. Algorithms are presented that examine many binding geometries and …

Can virtual reality be useful for visualizing and analyzing molecular structures and three-dimensional
(3D) microscopy? Uses we are exploring include studies of drug binding to …

We describe methods for interactive visualization and analysis of density maps available in
the UCSF Chimera molecular modeling package. The methods enable segmentation, fitting, …

The Molecular Interactive Display and Simulation (MIDAS) system is designed to display
and manipulate large macromolecules, such as proteins and nucleic acids. Several ancillary …

Background Comparing related structures and viewing the structures in the context of
sequence alignments are important tasks in protein structure-function research. While many …

Structural modeling of macromolecular complexes greatly benefits from interactive
visualization capabilities. Here we present the integration of several modeling tools into UCSF …

Advances in computational tools for atomic model building are leading to accurate models of
large molecular assemblies seen in electron microscopy, often at challenging resolutions of …