Characterization of intestinal microbiota and response to dietary virginiamycin supplementation in the broiler chicken

TJ Dumonceaux, JE Hill, SM Hemmingsen… - Applied and …, 2006 - Am Soc Microbiol
The inclusion of antibiotic growth promoters, such as virginiamycin, at subtherapeutic levels
in poultry feeds has a positive effect on health and growth characteristics, possibly due to …

Simultaneous profiling of seed‐associated bacteria and fungi reveals antagonistic interactions between microorganisms within a shared epiphytic microbiome on T …

…, JE Hill, SM Hemmingsen, TJ Dumonceaux - New …, 2014 - Wiley Online Library
In order to address the hypothesis that seeds from ecologically and geographically diverse
plants harbor characteristic epiphytic microbiota, we characterized the bacterial and fungal …

[HTML][HTML] The Chaperonin-60 Universal Target Is a Barcode for Bacteria That Enables De Novo Assembly of Metagenomic Sequence Data

MG Links, TJ Dumonceaux, SM Hemmingsen, JE Hill - PloS one, 2012 - journals.plos.org
Barcoding with molecular sequences is widely used to catalogue eukaryotic biodiversity.
Studies investigating the community dynamics of microbes have relied heavily on gene-centric …

Pyrosequencing of the chaperonin-60 universal target as a tool for determining microbial community composition

…, MG Links, JE Hill, TJ Dumonceaux… - Applied and …, 2009 - Am Soc Microbiol
We compared dideoxy sequencing of cloned chaperonin-60 universal target (cpn60 UT)
amplicons to pyrosequencing of amplicons derived from vaginal microbial communities. In …

The underestimated diversity of phytoplasmas in Latin America

…, CY Olivier, TJ Dumonceaux - … of systematic and …, 2016 - microbiologyresearch.org
Phytoplasmas (‘Candidatus Phytoplasma’) are insect-transmitted, cell-wall-less, plant-pathogenic
bacteria that cause economically important crop diseases. Because phytoplasmas are …

Molecular definition of vaginal microbiota in East African commercial sex workers

…, MG Links, JE Hill, TJ Dumonceaux… - Applied and …, 2011 - Am Soc Microbiol
Resistance to HIV infection in a cohort of commercial sex workers living in Nairobi, Kenya, is
linked to mucosal and antiinflammatory factors that may be influenced by the vaginal …

Comparison of ileum microflora of pigs fed corn-, wheat-, or barley-based diets by chaperonin-60 sequencing and quantitative PCR

…, BG Goldade, TJ Dumonceaux… - Applied and …, 2005 - Am Soc Microbiol
We have combined the culture-independent methods of high-throughput sequencing of
chaperonin-60 PCR product libraries and quantitative PCR to profile and quantify the small-…

Molecular characterization of anaerobic digester microbial communities identifies microorganisms that correlate to reactor performance

JR Town, MG Links, TA Fonstad, TJ Dumonceaux - Bioresource technology, 2014 - Elsevier
A time-course analysis was conducted of thermophilic anaerobic digestion of dairy manure
and wheat distillery thin stillage. Sequencing of chaperonin targets provided a phylogenetic …

Multiplex detection of bacteria associated with normal microbiota and with bacterial vaginosis in vaginal swabs by use of oligonucleotide-coupled fluorescent …

TJ Dumonceaux, J Schellenberg… - Journal of Clinical …, 2009 - Am Soc Microbiol
Bacterial vaginosis (BV) is a recurrent condition that is associated with a range of negative
outcomes, including the acquisition of human immunodeficiency virus and other sexually …

[HTML][HTML] Maternal vaginal microbiome composition does not affect development of the infant gut microbiome in early life

…, EJ Maan, AR Manges, TJ Dumonceaux… - Frontiers in cellular …, 2023 - frontiersin.org
Birth mode has been implicated as a major factor influencing neonatal gut microbiome
development, and it has been assumed that exposure to the maternal vaginal microbiome is …