User profiles for T. N. Petersen
 | Thomas Nordahl PetersenDTU Food, National Food Institute, Denmark Verified email at food.dtu.dk Cited by 17859 |
SignalP 4.0: discriminating signal peptides from transmembrane regions
To the Editor: The secretory signal peptide is a ubiquitous proteinsorting signal that targets
its passenger protein for translocation across the endoplasmic reticulum membrane in …
its passenger protein for translocation across the endoplasmic reticulum membrane in …
SignalP 5.0 improves signal peptide predictions using deep neural networks
Signal peptides (SPs) are short amino acid sequences in the amino terminus of many newly
synthesized proteins that target proteins into, or across, membranes. Bioinformatic tools can …
synthesized proteins that target proteins into, or across, membranes. Bioinformatic tools can …
[HTML][HTML] A generic method for assignment of reliability scores applied to solvent accessibility predictions
Background Estimation of the reliability of specific real value predictions is nontrivial and the
efficacy of this is often questionable. It is important to know if you can trust a given prediction …
efficacy of this is often questionable. It is important to know if you can trust a given prediction …
[HTML][HTML] Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage
…, MP Koopmans, H Vigre, TN Petersen… - Nature …, 2019 - nature.com
Antimicrobial resistance (AMR) is a serious threat to global public health, but obtaining
representative data on AMR for healthy human populations is difficult. Here, we use …
representative data on AMR for healthy human populations is difficult. Here, we use …
Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder
Objectives Antimicrobial resistance (AMR) in clinically relevant bacteria is a growing threat
to public health globally. In these bacteria, antimicrobial resistance genes are often …
to public health globally. In these bacteria, antimicrobial resistance genes are often …
Improved metagenome binning and assembly using deep variational autoencoders
Despite recent advances in metagenomic binning, reconstruction of microbial species from
metagenomics data remains challenging. Here we develop variational autoencoders for …
metagenomics data remains challenging. Here we develop variational autoencoders for …
CPHmodels-3.0—remote homology modeling using structure-guided sequence profiles
CPHmodels-3.0 is a web server predicting protein 3D structure by use of single template
homology modeling. The server employs a hybrid of the scoring functions of CPHmodels-2.0 …
homology modeling. The server employs a hybrid of the scoring functions of CPHmodels-2.0 …
[HTML][HTML] Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance
Antimicrobial resistance (AMR) is a major threat to global health. Understanding the emergence,
evolution, and transmission of individual antibiotic resistance genes (ARGs) is essential …
evolution, and transmission of individual antibiotic resistance genes (ARGs) is essential …
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
Antimicrobial resistance (AMR) in bacteria and associated human morbidity and mortality is
increasing. The use of antimicrobials in livestock selects for AMR that can subsequently be …
increasing. The use of antimicrobials in livestock selects for AMR that can subsequently be …
[PDF][PDF] The crystal structure of rhamnogalacturonase A from Aspergillus aculeatus: a right-handed parallel β helix
Background: Pectic substances are the major polysaccharide components of the middle
lamella and primary cell wall of dicotyledonous plants. They consist of homogalacturonan ‘…
lamella and primary cell wall of dicotyledonous plants. They consist of homogalacturonan ‘…