[HTML][HTML] Array programming with NumPy
Array programming provides a powerful, compact and expressive syntax for accessing,
manipulating and operating on data in vectors, matrices and higher-dimensional arrays. NumPy …
manipulating and operating on data in vectors, matrices and higher-dimensional arrays. NumPy …
[HTML][HTML] SciPy 1.0: fundamental algorithms for scientific computing in Python
… The SciPy Documentation Project 33,34 used these tools to complete documentation of
SciPy’s user-facing functionality: offering t-shirts to contributors from around the world in …
SciPy’s user-facing functionality: offering t-shirts to contributors from around the world in …
[HTML][HTML] Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …
ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-seq)
has become a valuable and widely used approach for mapping the genomic location of …
has become a valuable and widely used approach for mapping the genomic location of …
[HTML][HTML] Architecture of the human regulatory network derived from ENCODE data
…, D Raha, L Ramirez, TE Reddy, B Reed, M Shi, T Slifer… - Nature, 2012 - nature.com
Transcription factors bind in a combinatorial fashion to specify the on-and-off states of genes;
the ensemble of these binding events forms a regulatory network, constituting the wiring …
the ensemble of these binding events forms a regulatory network, constituting the wiring …
Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers
Technologies that enable targeted manipulation of epigenetic marks could be used to
precisely control cell phenotype or interrogate the relationship between the epigenome and …
precisely control cell phenotype or interrogate the relationship between the epigenome and …
Mortality, in-hospital morbidity, care practices, and 2-year outcomes for extremely preterm infants in the US, 2013-2018
…, SL McKee, RA Mosquera, M Poe, T Reddy… - Jama, 2022 - jamanetwork.com
Importance Despite improvement during recent decades, extremely preterm infants continue
to contribute disproportionately to neonatal mortality and childhood morbidity. Objective To …
to contribute disproportionately to neonatal mortality and childhood morbidity. Objective To …
RNA-guided gene activation by CRISPR-Cas9–based transcription factors
Technologies for engineering synthetic transcription factors have enabled many advances
in medical and scientific research. In contrast to existing methods based on engineering of …
in medical and scientific research. In contrast to existing methods based on engineering of …
[HTML][HTML] COVID-19 and resilience of healthcare systems in ten countries
…, A Phengsavanh, T Reddy, T Rittiphairoj… - Nature medicine, 2022 - nature.com
Declines in health service use during the Coronavirus Disease 2019 (COVID-19) pandemic
could have important effects on population health. In this study, we used an interrupted time …
could have important effects on population health. In this study, we used an interrupted time …
[HTML][HTML] A genomic catalog of Earth's microbiomes
The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has
enabled insights into the ecology and evolution of environmental and host-associated …
enabled insights into the ecology and evolution of environmental and host-associated …