User profiles for T. Reddy

Tyler Reddy

- Verified email at dal.ca - Cited by 44314

Timothy E Reddy

- Verified email at duke.edu - Cited by 35224

TBK Reddy

- Verified email at lbl.gov - Cited by 8530

[HTML][HTML] Array programming with NumPy

…, P Peterson, P Gérard-Marchant, K Sheppard, T Reddy… - Nature, 2020 - nature.com
Array programming provides a powerful, compact and expressive syntax for accessing,
manipulating and operating on data in vectors, matrices and higher-dimensional arrays. NumPy …

[HTML][HTML] SciPy 1.0: fundamental algorithms for scientific computing in Python

…, R Gommers, TE Oliphant, M Haberland, T Reddy… - Nature …, 2020 - nature.com
… The SciPy Documentation Project 33,34 used these tools to complete documentation of
SciPy’s user-facing functionality: offering t-shirts to contributors from around the world in …

[HTML][HTML] Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea

…, M Harmon-Smith, D Doud, TBK Reddy… - Nature …, 2017 - nature.com
We present two standards developed by the Genomic Standards Consortium (GSC) for
reporting bacterial and archaeal genome sequences. Both are extensions of the Minimum …

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

…, MJ Pazin, MD Perry, D Raha, TE Reddy… - Genome …, 2012 - genome.cshlp.org
Chromatin immunoprecipitation (ChIP) followed by high-throughput DNA sequencing (ChIP-seq)
has become a valuable and widely used approach for mapping the genomic location of …

[HTML][HTML] Architecture of the human regulatory network derived from ENCODE data

…, D Raha, L Ramirez, TE Reddy, B Reed, M Shi, T Slifer… - Nature, 2012 - nature.com
Transcription factors bind in a combinatorial fashion to specify the on-and-off states of genes;
the ensemble of these binding events forms a regulatory network, constituting the wiring …

Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers

…, PI Thakore, GE Crawford, TE Reddy… - Nature …, 2015 - nature.com
Technologies that enable targeted manipulation of epigenetic marks could be used to
precisely control cell phenotype or interrogate the relationship between the epigenome and …

Mortality, in-hospital morbidity, care practices, and 2-year outcomes for extremely preterm infants in the US, 2013-2018

…, SL McKee, RA Mosquera, M Poe, T Reddy… - Jama, 2022 - jamanetwork.com
Importance Despite improvement during recent decades, extremely preterm infants continue
to contribute disproportionately to neonatal mortality and childhood morbidity. Objective To …

RNA-guided gene activation by CRISPR-Cas9–based transcription factors

…, KW Leong, F Guilak, GE Crawford, TE Reddy… - Nature …, 2013 - nature.com
Technologies for engineering synthetic transcription factors have enabled many advances
in medical and scientific research. In contrast to existing methods based on engineering of …

[HTML][HTML] COVID-19 and resilience of healthcare systems in ten countries

…, A Phengsavanh, T Reddy, T Rittiphairoj… - Nature medicine, 2022 - nature.com
Declines in health service use during the Coronavirus Disease 2019 (COVID-19) pandemic
could have important effects on population health. In this study, we used an interrupted time …

[HTML][HTML] A genomic catalog of Earth's microbiomes

…, J Ladau, S Mukherjee, TBK Reddy, T Nielsen… - Nature …, 2021 - nature.com
The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has
enabled insights into the ecology and evolution of environmental and host-associated …