User profiles for T. Taus
Thomas TausPhD Student, Vienna University of Veterinary Medicine Verified email at vetmeduni.ac.at Cited by 2245 |
Universal and confident phosphorylation site localization using phosphoRS
T Taus, T Köcher, P Pichler, C Paschke… - Journal of proteome …, 2011 - ACS Publications
An algorithm for the assignment of phosphorylation sites in peptides is described. The
program uses tandem mass spectrometry data in conjunction with the respective peptide …
program uses tandem mass spectrometry data in conjunction with the respective peptide …
MS Amanda, a universal identification algorithm optimized for high accuracy tandem mass spectra
…, P Pichler, T Stranzl, J Stadlmann, T Taus… - Journal of proteome …, 2014 - ACS Publications
… ion tolerance t, considering … t (2)probability p is defined as (3) The overlap O(F(s,pep,m))
is the sum of all overlapping ranges in the theoretical spectrum F considering mass tolerance t. …
is the sum of all overlapping ranges in the theoretical spectrum F considering mass tolerance t. …
Peptide labeling with isobaric tags yields higher identification rates using iTRAQ 4-plex compared to TMT 6-plex and iTRAQ 8-plex on LTQ Orbitrap
…, T Kocher, J Holzmann, M Mazanek, T Taus… - Analytical …, 2010 - ACS Publications
Peptide labeling with isobaric tags has become a popular technique in quantitative shotgun
proteomics. Using two different samples viz. a protein mixture and HeLa extracts, we show …
proteomics. Using two different samples viz. a protein mixture and HeLa extracts, we show …
[HTML][HTML] Genetic redundancy fuels polygenic adaptation in Drosophila
The genetic architecture of adaptive traits is of key importance to predict evolutionary
responses. Most adaptive traits are polygenic—ie, result from selection on a large number of …
responses. Most adaptive traits are polygenic—ie, result from selection on a large number of …
Unambiguous phosphosite localization using electron-transfer/higher-energy collision dissociation (EThcD)
We recently introduced a novel scheme combining electron-transfer and higher-energy
collision dissociation (termed EThcD), for improved peptide ion fragmentation and identification. …
collision dissociation (termed EThcD), for improved peptide ion fragmentation and identification. …
Quantifying selection with pool-seq time series data
… We consider unlinked biallelic loci with alleles A and a that evolve at a constant population
size N e for t nonoverlapping generations. Relative fitness is given by w A =1 + s and w a =1 …
size N e for t nonoverlapping generations. Relative fitness is given by w A =1 + s and w a =1 …
Estimating the effective population size from temporal allele frequency changes in experimental evolution
… Additionally, we take into account variable coverage levels across the genome (coverage
Rij for site i at T=j, j∈{0,t}) when correcting for the variance coming from sequencing. …
Rij for site i at T=j, j∈{0,t}) when correcting for the variance coming from sequencing. …
[HTML][HTML] qcML: an exchange format for quality control metrics from mass spectrometry experiments
Quality control is increasingly recognized as a crucial aspect of mass spectrometry based
proteomics. Several recent papers discuss relevant parameters for quality control and present …
proteomics. Several recent papers discuss relevant parameters for quality control and present …
An omnibus test for the global null hypothesis
A Futschik, T Taus… - Statistical methods in …, 2019 - journals.sagepub.com
… We therefore estimate the distribution of T * by simulating uniformly distributed p-values
under the global null. Note, however, that some of our considered transformations lead to …
under the global null. Note, however, that some of our considered transformations lead to …
DNA Motifs Are Not General Predictors of Recombination in Two Drosophila Sister Species
Meiotic recombination is crucial for chromosomal segregation and facilitates the spread of
beneficial and removal of deleterious mutations. Recombination rates frequently vary along …
beneficial and removal of deleterious mutations. Recombination rates frequently vary along …