[HTML][HTML] A large-scale evaluation of computational protein function prediction

P Radivojac, WT Clark, TR Oron, AM Schnoes… - Nature …, 2013 - nature.com
Automated annotation of protein function is challenging. As the number of sequenced
genomes rapidly grows, the overwhelming majority of protein products can only be annotated …

[HTML][HTML] An expanded evaluation of protein function prediction methods shows an improvement in accuracy

Y Jiang, TR Oron, WT Clark, AR Bankapur, D D'Andrea… - Genome biology, 2016 - Springer
Background A major bottleneck in our understanding of the molecular underpinnings of life
is the assignment of function to proteins. While molecular experiments provide the most …

[HTML][HTML] Astrocyte senescence promotes glutamate toxicity in cortical neurons

C Limbad, TR Oron, F Alimirah, AR Davalos, TE Tracy… - PloS one, 2020 - journals.plos.org
Neurodegeneration is a major age-related pathology. Cognitive decline is characteristic of
patients with Alzheimer’s and related dementias and cancer patients after chemo- or radio-…

[PDF][PDF] SILAC analysis reveals increased secretion of hemostasis-related factors by senescent cells

CD Wiley, S Liu, C Limbad, AM Zawadzka, J Beck… - Cell reports, 2019 - cell.com
Cellular senescence irreversibly arrests cell proliferation, accompanied by a multi-component
senescence-associated secretory phenotype (SASP) that participates in several age-…

[PDF][PDF] Vitamin D promotes protein homeostasis and longevity via the stress response pathway genes skn-1, ire-1, and xbp-1

KA Mark, KJ Dumas, D Bhaumik, B Schilling, S Davis… - Cell reports, 2016 - cell.com
Vitamin D has multiple roles, including the regulation of bone and calcium homeostasis.
Deficiency of 25-hydroxyvitamin D, the major circulating form of vitamin D, is associated with an …

Morquio A Syndrome‐Associated Mutations: A Review of Alterations in the GALNS Gene and a New Locus‐Specific Database

A Morrone, A Caciotti, R Atwood, K Davidson… - Human …, 2014 - Wiley Online Library
Morquio A syndrome (mucopolysaccharidosis IVA ) is an autosomal recessive disorder that
results from deficient activity of the enzyme N ‐acetylgalactosamine‐6‐sulfatase ( GALNS ) …

Age-related changes in polycomb gene regulation disrupt lineage fidelity in intestinal stem cells

…, JA Hackney, M Pawlak, T Ronnen Oron… - Elife, 2021 - elifesciences.org
Tissue homeostasis requires long-term lineage fidelity of somatic stem cells. Whether and
how age-related changes in somatic stem cells impact the faithful execution of lineage …

[HTML][HTML] The WT1-like transcription factor Klumpfuss maintains lineage commitment of enterocyte progenitors in the Drosophila intestine

J Korzelius, S Azami, T Ronnen-Oron, P Koch… - Nature …, 2019 - nature.com
In adult epithelial stem cell lineages, the precise differentiation of daughter cells is critical to
maintain tissue homeostasis. Notch signaling controls the choice between absorptive and …

[HTML][HTML] Mifepristone Increases Life Span of Virgin Female Drosophila on Regular and High-fat Diet Without Reducing Food Intake

…, TAU Hilsabeck, HS Bell, T Ronnen-Oron… - Frontiers in …, 2021 - frontiersin.org
Background: The synthetic steroid mifepristone is reported to have anti-obesity and anti-diabetic
effects in mammals on normal and high-fat diets (HFD). We previously reported that …

Cohesin controls intestinal stem cell identity by maintaining association of Escargot with target promoters

A Khaminets, T Ronnen-Oron, M Baldauf, E Meier… - Elife, 2020 - elifesciences.org
Intestinal stem cells (ISCs) maintain regenerative capacity of the intestinal epithelium. Their
function and activity are regulated by transcriptional changes, yet how such changes are …