Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors

AC Paoletti, TJ Parmely… - Proceedings of the …, 2006 - National Acad Sciences
Components of multiprotein complexes are routinely determined by using proteomic approaches.
However, this information lacks functional content except when new complex members …

[HTML][HTML] Human mediator subunit MED26 functions as a docking site for transcription elongation factors

H Takahashi, TJ Parmely, S Sato, C Tomomori-Sato… - Cell, 2011 - cell.com
Promoter-proximal pausing by initiated RNA polymerase II (Pol II) and regulated release of
paused polymerase into productive elongation has emerged as a major mechanism of …

[PDF][PDF] A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology

S Sato, C Tomomori-Sato, TJ Parmely, L Florens… - Molecular cell, 2004 - cell.com
The Mediator is a multiprotein transcriptional coactivator that is expressed ubiquitously in
eukaryotes from yeast to mammals and is required for induction of RNA polymerase II (pol II) …

[HTML][HTML] An interferon-γ-activated site (GAS) is necessary for full expression of the mouse iNOS gene in response to interferon-γ and lipopolysaccharide

J Gao, DC Morrison, TJ Parmely, SW Russell… - Journal of biological …, 1997 - ASBMB
Mouse macrophages can be stimulated by interferon (IFN)-γ and bacterial lipopolysaccharide
(LPS) to produce nitric oxide (NO) as the result of expression of the inducible NO synthase …

[HTML][HTML] Identification of new subunits of the multiprotein mammalian TRRAP/TIP60-containing histone acetyltransferase complex

…, S Sato, I Sorokina, TJ Parmely… - Journal of Biological …, 2003 - ASBMB
The mammalian ATM/PI 3-kinase-related TRRAP protein was previously found to be a
component of a multi-protein histone acetyltransferase (HAT) complex containing the HAT TIP60. …

Suppression of m6A reader Ythdf2 promotes hematopoietic stem cell expansion

…, K Hall, M Peterson, A Perera, JS Haug, T Parmely… - Cell research, 2018 - nature.com
Transplantation of hematopoietic stem cells (HSCs) from human umbilical cord blood (hUCB)
holds great promise for treating a broad spectrum of hematological disorders including …

[PDF][PDF] The Dlk1-Gtl2 locus preserves LT-HSC function by inhibiting the PI3K-mTOR pathway to restrict mitochondrial metabolism

…, M Zhao, L Zhi, A Venkatraman, JS Haug, T Parmely… - Cell stem cell, 2016 - cell.com
The mammalian imprinted Dlk1-Gtl2 locus produces multiple non-coding RNAs (ncRNAs)
from the maternally inherited allele, including the largest miRNA cluster in the mammalian …

Combined expansion microscopy with structured illumination microscopy for analyzing protein complexes

Y Wang, Z Yu, CK Cahoon, T Parmely, N Thomas… - Nature protocols, 2018 - nature.com
Biologists have long been fascinated with the organization and function of intricate protein
complexes. Therefore, techniques for precisely imaging protein complexes and the location of …

[PDF][PDF] Retinoid-sensitive epigenetic regulation of the Hoxb cluster maintains normal hematopoiesis and inhibits leukemogenesis

…, A Venkatraman, A Box, A Perera, JS Haug, T Parmely… - Cell Stem Cell, 2018 - cell.com
Hox genes modulate the properties of hematopoietic stem cells (HSCs) and reacquired Hox
expression in progenitors contributes to leukemogenesis. Here, our transcriptome and DNA …

[HTML][HTML] The mammalian Mediator complex

…, L Florens, S Sato, C Tomomori-Sato, TJ Parmely… - FEBS letters, 2005 - Elsevier
The multiprotein Mediator (Med) complex is an evolutionarily conserved transcriptional regulator
that plays important roles in activation and repression of RNA polymerase II transcription…