User profiles for Theodore R. Pak
Theodore PakMassachusetts General Hospital Verified email at mgh.harvard.edu Cited by 1216 |
Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins
Genotypic differences greatly influence susceptibility and resistance to disease.
Understanding genotype–phenotype relationships requires that phenotypes be viewed as …
Understanding genotype–phenotype relationships requires that phenotypes be viewed as …
Discontinuation of universal admission testing for SARS-CoV-2 and hospital-onset COVID-19 infections in England and Scotland
Some hospitals test all patients for SARS-CoV-2 infection on admission to prevent transmission
from patients with unrecognized infection to staff and other patients, since two-thirds of …
from patients with unrecognized infection to staff and other patients, since two-thirds of …
Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases
D Michlmayr, TR Pak, AH Rahman… - Molecular systems …, 2018 - embopress.org
Chikungunya virus ( CHIKV ) is a mosquito‐borne alphavirus that causes global epidemics
of debilitating disease worldwide. To gain functional insight into the host cellular genes …
of debilitating disease worldwide. To gain functional insight into the host cellular genes …
Genome Plasticity of agr-Defective Staphylococcus aureus during Clinical Infection
Therapy for bacteremia caused by Staphylococcus aureus is often ineffective, even when
treatment conditions are optimal according to experimental protocols. Adapted subclones, …
treatment conditions are optimal according to experimental protocols. Adapted subclones, …
Risk of misleading conclusions in observational studies of time-to-antibiotics and mortality in suspected sepsis
TR Pak, J Young, CS McKenna, A Agan… - Clinical Infectious …, 2023 - academic.oup.com
Background Influential studies conclude that each hour until antibiotics increases mortality
in sepsis. However, these analyses often (1) adjusted for limited covariates, (2) included …
in sepsis. However, these analyses often (1) adjusted for limited covariates, (2) included …
[PDF][PDF] Timing and spectrum of antibiotic treatment for suspected sepsis and septic shock: why so controversial?
Background Sepsis, defined as a dysregulated host response to infection leading to acute
organ dysfunction, affects millions of patients per year. It is associated with 850,000 visits to …
organ dysfunction, affects millions of patients per year. It is associated with 850,000 visits to …
How next-generation sequencing and multiscale data analysis will transform infectious disease management
TR Pak, A Kasarskis - Clinical Infectious Diseases, 2015 - academic.oup.com
Recent reviews have examined the extent to which routine next-generation sequencing (NGS)
on clinical specimens will improve the capabilities of clinical microbiology laboratories in …
on clinical specimens will improve the capabilities of clinical microbiology laboratories in …
[HTML][HTML] High-dimensional CyTOF analysis of dengue virus–infected human DCs reveals distinct viral signatures
Dengue virus (DENV) is the most prevalent mosquito-borne virus causing human disease.
Of the 4 DENV serotypes, epidemiological data suggest that DENV-2 secondary infections …
Of the 4 DENV serotypes, epidemiological data suggest that DENV-2 secondary infections …
Real-time investigation of a large nosocomial influenza A outbreak informed by genomic epidemiology
Background Nosocomial respiratory virus outbreaks represent serious public hgealth
challenges. Rapid and precise identification of cases and tracing of transmission chains is critical …
challenges. Rapid and precise identification of cases and tracing of transmission chains is critical …
A complete genome screening program of clinical methicillin-resistant Staphylococcus aureus isolates identifies the origin and progression of a neonatal intensive …
…, F Samaroo, R Sebra, R Karam-Howlin… - Journal of clinical …, 2019 - Am Soc Microbiol
Whole-genome sequencing (WGS) of Staphylococcus aureus is increasingly used as part of
infection prevention practices. In this study, we established a long-read technology-based …
infection prevention practices. In this study, we established a long-read technology-based …