User profiles for Theodore R. Pak

Theodore Pak

Massachusetts General Hospital
Verified email at mgh.harvard.edu
Cited by 1216

Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins

…, R James, A Korkhin, L Litovchick, JC Mar, TR Pak… - Nature, 2012 - nature.com
Genotypic differences greatly influence susceptibility and resistance to disease.
Understanding genotype–phenotype relationships requires that phenotypes be viewed as …

Discontinuation of universal admission testing for SARS-CoV-2 and hospital-onset COVID-19 infections in England and Scotland

TR Pak, C Rhee, R Wang, M Klompas - JAMA Internal Medicine, 2023 - jamanetwork.com
Some hospitals test all patients for SARS-CoV-2 infection on admission to prevent transmission
from patients with unrecognized infection to staff and other patients, since two-thirds of …

Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases

D Michlmayr, TR Pak, AH Rahman… - Molecular systems …, 2018 - embopress.org
Chikungunya virus ( CHIKV ) is a mosquito‐borne alphavirus that causes global epidemics
of debilitating disease worldwide. To gain functional insight into the host cellular genes …

Genome Plasticity of agr-Defective Staphylococcus aureus during Clinical Infection

…, TR Pak, WE Sause, K Kumar, R Sebra… - Infection and …, 2018 - Am Soc Microbiol
Therapy for bacteremia caused by Staphylococcus aureus is often ineffective, even when
treatment conditions are optimal according to experimental protocols. Adapted subclones, …

Risk of misleading conclusions in observational studies of time-to-antibiotics and mortality in suspected sepsis

TR Pak, J Young, CS McKenna, A Agan… - Clinical Infectious …, 2023 - academic.oup.com
Background Influential studies conclude that each hour until antibiotics increases mortality
in sepsis. However, these analyses often (1) adjusted for limited covariates, (2) included …

[PDF][PDF] Timing and spectrum of antibiotic treatment for suspected sepsis and septic shock: why so controversial?

TR Pak, C Rhee, M Klompas - Infectious Disease Clinics of North America, 2022 - Elsevier
Background Sepsis, defined as a dysregulated host response to infection leading to acute
organ dysfunction, affects millions of patients per year. It is associated with 850,000 visits to …

How next-generation sequencing and multiscale data analysis will transform infectious disease management

TR Pak, A Kasarskis - Clinical Infectious Diseases, 2015 - academic.oup.com
Recent reviews have examined the extent to which routine next-generation sequencing (NGS)
on clinical specimens will improve the capabilities of clinical microbiology laboratories in …

[HTML][HTML] High-dimensional CyTOF analysis of dengue virus–infected human DCs reveals distinct viral signatures

RE Hamlin, A Rahman, TR Pak, K Maringer, I Mena… - JCI insight, 2017 - ncbi.nlm.nih.gov
Dengue virus (DENV) is the most prevalent mosquito-borne virus causing human disease.
Of the 4 DENV serotypes, epidemiological data suggest that DENV-2 secondary infections …

Real-time investigation of a large nosocomial influenza A outbreak informed by genomic epidemiology

…, TR Pak, HA Alshammary, R Sebra… - Clinical Infectious …, 2021 - academic.oup.com
Background Nosocomial respiratory virus outbreaks represent serious public hgealth
challenges. Rapid and precise identification of cases and tracing of transmission chains is critical …

A complete genome screening program of clinical methicillin-resistant Staphylococcus aureus isolates identifies the origin and progression of a neonatal intensive …

…, F Samaroo, R Sebra, R Karam-Howlin… - Journal of clinical …, 2019 - Am Soc Microbiol
Whole-genome sequencing (WGS) of Staphylococcus aureus is increasingly used as part of
infection prevention practices. In this study, we established a long-read technology-based …