Efficient ancestry and mutation simulation with msprime 1.0
…, MF Rodrigues, K Saunack, T Sellinger… - Genetics, 2022 - academic.oup.com
Stochastic simulation is a key tool in population genetics, since the models involved are
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
often analytically intractable and simulation is usually the only way of obtaining ground-truth …
[HTML][HTML] Inference of past demography, dormancy and self-fertilization rates from whole genome sequence data
Several methods based on the Sequential Markovian coalescence (SMC) have been developed
that make use of genome sequence data to uncover population demographic history, …
that make use of genome sequence data to uncover population demographic history, …
Are the better cooperators dormant or quiescent?
Despite the wealth of empirical and theoretical studies, the origin and maintenance of
cooperation is still an evolutionary riddle. In this context, ecological life-history traits which affect …
cooperation is still an evolutionary riddle. In this context, ecological life-history traits which affect …
Determinants of rapid adaptation in species with large variance in offspring production
K Korfmann, M Temple‐Boyer, T Sellinger… - Molecular …, 2023 - Wiley Online Library
The speed of population adaptation to changing biotic and abiotic environments is determined
by the interaction between genetic drift, positive selection and linkage effects. Many …
by the interaction between genetic drift, positive selection and linkage effects. Many …
Joint inference of evolutionary transitions to self-fertilization and demographic history using whole-genome sequences
The evolution from outcrossing to selfing occurred recently across the eukaryote tree of life
in plants, animals, fungi, and algae. Despite short-term advantages, selfing is hypothetically …
in plants, animals, fungi, and algae. Despite short-term advantages, selfing is hypothetically …
Limits and convergence properties of the sequentially Markovian coalescent
TPP Sellinger, D Abu‐Awad… - Molecular Ecology …, 2021 - Wiley Online Library
Several methods based on the sequentially Markovian coalescent (SMC) make use of full
genome sequence data from samples to infer population demographic history including past …
genome sequence data from samples to infer population demographic history including past …
[HTML][HTML] Simultaneous inference of past demography and selection from the ancestral recombination graph under the beta coalescent
K Korfmann, TPP Sellinger, F Freund… - Peer Community …, 2024 - peercommunityjournal.org
The reproductive mechanism of a species is a key driver of genome evolution. The standard
Wright-Fisher model for the reproduction of individuals in a population assumes that each …
Wright-Fisher model for the reproduction of individuals in a population assumes that each …
[HTML][HTML] Correction: Inference of past demography, dormancy and self-fertilization rates from whole genome sequence data
The mutation and recombination rates reported throughout the article are incorrect by a factor
of 2. The captions of Figs 1–4, Table 2, and S1–S19 Figs are incorrect. Additionally, the Y …
of 2. The captions of Figs 1–4, Table 2, and S1–S19 Figs are incorrect. Additionally, the Y …
Improved inference of population histories by integrating genomic and epigenomic data
T Sellinger, F Johannes, A Tellier - bioRxiv, 2023 - biorxiv.org
With the availability of high quality full genome polymorphism (SNPs) data, it becomes
feasible to study the past demographic and selective history of populations in exquisite detail. …
feasible to study the past demographic and selective history of populations in exquisite detail. …
Inference of evolutionary transitions to self-fertilization using whole-genome sequences
The evolution from outcrossing to selfing is a transition that occurred recurrently throughout
the eukaryote tree of life, in plants, animals, fungi and algae. Despite some short-term …
the eukaryote tree of life, in plants, animals, fungi and algae. Despite some short-term …