[PDF][PDF] Single-cell analysis of human retina identifies evolutionarily conserved and species-specific mechanisms controlling development

…, S He, J Zhang, GL Stein-O'Brien, TD Sherman… - Developmental cell, 2020 - cell.com
The development of single-cell RNA sequencing (scRNA-seq) has allowed high-resolution
analysis of cell-type diversity and transcriptional networks controlling cell-fate specification. …

Marine electrical imaging reveals novel freshwater transport mechanism in Hawai 'i

E Attias, D Thomas, D Sherman, K Ismail… - Science …, 2020 - science.org
Conventional hydrogeologic framework models used to compute ocean island sustainable
yields and aquifer storage neglect the complexity of the nearshore and offshore submarine …

[HTML][HTML] CoGAPS 3: Bayesian non-negative matrix factorization for single-cell analysis with asynchronous updates and sparse data structures

TD Sherman, T Gao, EJ Fertig - BMC bioinformatics, 2020 - Springer
Background Bayesian factorization methods, including Coordinated Gene Activity in Pattern
Sets (CoGAPS), are emerging as powerful analysis tools for single cell data. However, these …

Differential variation analysis enables detection of tumor heterogeneity using single-cell RNA-sequencing data

EF Davis-Marcisak, TD Sherman, P Orugunta… - Cancer research, 2019 - AACR
… from breast cancer data (25) to explore the relationship between the TCR repertoire and
heterogeneity in immune signaling pathways using 27,000 T cells with paired scRNA and V(D)J …

Are Life Settlements a Security?

BT Casey, TD Sherman - Journal of Structured Finance, 2007 - search.proquest.com
Given the extraordinary growth of the US life settlement industry over the last decade, it is
not surprising to find increased attention and scrutiny by academicians, the media and legal …

[HTML][HTML] CancerInSilico: An R/Bioconductor package for combining mathematical and statistical modeling to simulate time course bulk and single cell gene expression …

TD Sherman, LT Kagohara, R Cao… - PLoS computational …, 2019 - journals.plos.org
Bioinformatics techniques to analyze time course bulk and single cell omics data are advancing.
The absence of a known ground truth of the dynamics of molecular changes challenges …

COVID-19 serology at population scale: SARS-CoV-2-specific antibody responses in saliva

…, B Detrick, JK Fairley, AC Sherman… - Journal of clinical …, 2020 - Am Soc Microbiol
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is the cause of an ongoing
pandemic that has infected over 36 million and killed over 1 million people. Informed …

Prospective evaluation of community-acquired acute-phase hepatitis C virus infection

…, SG Sherman, S Strathdee, D Ompad… - Clinical infectious …, 2005 - academic.oup.com
Background . More than two-thirds of hepatitis C virus (HCV) infections in Western countries
are caused by injection drug use, but prospective clinical data regarding the most common …

Human papillomaviruses, herpes simplex viruses, and the risk of oral cancer in men

…, DB Thomas, B McKnight, KJ Sherman… - American journal of …, 1992 - academic.oup.com
A population-based case-control study was conducted in western Washington state to
examine the relations between infection with human papilloma viruses (HPV), herpes simplex …

Algorithm for treatment of focal cartilage defects of the knee: classic and new procedures

BB Hinckel, D Thomas, EE Vellios, KJ Hancock… - Cartilage, 2021 - journals.sagepub.com
Objective To create a treatment algorithm for focal grade 3 or 4 cartilage defects of the knee
using both classic and novel cartilage restoration techniques. Design A comprehensive …