[BOOK][B] Statistical parametric mapping: the analysis of functional brain images

…, KJ Friston, JT Ashburner, SJ Kiebel, TE Nichols - 2011 - books.google.com
In an age where the amount of data collected from brain imaging is increasing constantly, it
is of critical importance to analyse those data within an accepted framework to ensure proper …

Tract-based spatial statistics: voxelwise analysis of multi-subject diffusion data

…, H Johansen-Berg, D Rueckert, TE Nichols… - Neuroimage, 2006 - Elsevier
There has been much recent interest in using magnetic resonance diffusion imaging to
provide information about anatomical connectivity in the brain, by measuring the anisotropic …

[HTML][HTML] Reproducible brain-wide association studies require thousands of individuals

…, SE Petersen, H Garavan, WK Thompson, TE Nichols… - Nature, 2022 - nature.com
Magnetic resonance imaging (MRI) has transformed our understanding of the human brain
through well-replicated mapping of abilities to specific structures (for example, lesion studies) …

Nonparametric permutation tests for functional neuroimaging: a primer with examples

TE Nichols, AP Holmes - Human brain mapping, 2002 - Wiley Online Library
Requiring only minimal assumptions for validity, nonparametric permutation testing provides
a flexible and intuitive methodology for the statistical analysis of data from functional …

Threshold-free cluster enhancement: addressing problems of smoothing, threshold dependence and localisation in cluster inference

SM Smith, TE Nichols - Neuroimage, 2009 - Elsevier
Many image enhancement and thresholding techniques make use of spatial neighbourhood
information to boost belief in extended areas of signal. The most common such approach in …

[HTML][HTML] SARS-CoV-2 is associated with changes in brain structure in UK Biobank

…, R Collins, PM Matthews, N Allen, KL Miller, TE Nichols… - Nature, 2022 - nature.com
There is strong evidence of brain-related abnormalities in COVID-19 1 , 2 , 3 , 4 , 5 , 6 , 7 , 8 ,
9 , 10 , 11 , 12 – 13 . However, it remains unknown whether the impact of SARS-CoV-2 …

Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates

A Eklund, TE Nichols… - Proceedings of the …, 2016 - National Acad Sciences
The most widely used task functional magnetic resonance imaging (fMRI) analyses use
parametric statistical methods that depend on a variety of assumptions. In this work, we use real …

[HTML][HTML] Permutation inference for the general linear model

…, GR Ridgway, MA Webster, SM Smith, TE Nichols - Neuroimage, 2014 - Elsevier
Permutation methods can provide exact control of false positives and allow the use of non-standard
statistics, making only weak assumptions about the data. With the availability of fast …

Large-scale automated synthesis of human functional neuroimaging data

T Yarkoni, RA Poldrack, TE Nichols, DC Van Essen… - Nature …, 2011 - nature.com
The rapid growth of the literature on neuroimaging in humans has led to major advances in
our understanding of human brain function but has also made it increasingly difficult to …

Network modelling methods for FMRI

…, M Webster, CF Beckmann, TE Nichols… - Neuroimage, 2011 - Elsevier
There is great interest in estimating brain “networks” from FMRI data. This is often attempted
by identifying a set of functional “nodes” (eg, spatial ROIs or ICA maps) and then conducting …