User profiles for Thomas E. Gorochowski
Thomas E. GorochowskiRoyal Society University Research Fellow / Associate Professor, University of Bristol Verified email at bristol.ac.uk Cited by 2584 |
Burden-driven feedback control of gene expression
Cells use feedback regulation to ensure robust growth despite fluctuating demands for
resources and differing environmental conditions. However, the expression of foreign proteins …
resources and differing environmental conditions. However, the expression of foreign proteins …
Towards the fully automated monitoring of ecological communities
High‐resolution monitoring is fundamental to understand ecosystems dynamics in an era of
global change and biodiversity declines. While real‐time and automated monitoring of …
global change and biodiversity declines. While real‐time and automated monitoring of …
Synchronization and control of complex networks via contraction, adaptation and evolution
…, M Di Bernardo, TE Gorochowski… - IEEE Circuits and …, 2010 - ieeexplore.ieee.org
Complex networked systems abound in Nature and Technology. They consist of a multitude
of interacting agents communicating with each other over a web of complex interconnections…
of interacting agents communicating with each other over a web of complex interconnections…
[HTML][HTML] BSim: an agent-based tool for modeling bacterial populations in systems and synthetic biology
TE Gorochowski, A Matyjaszkiewicz, T Todd, N Oak… - 2012 - journals.plos.org
Large-scale collective behaviors such as synchronization and coordination spontaneously
arise in many bacterial populations. With systems biology attempting to understand these …
arise in many bacterial populations. With systems biology attempting to understand these …
Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate
TE Gorochowski, Z Ignatova… - Nucleic acids …, 2015 - academic.oup.com
Translation of protein from mRNA is a complex multi-step process that occurs at a non-uniform
rate. Variability in ribosome speed along an mRNA enables refinement of the proteome …
rate. Variability in ribosome speed along an mRNA enables refinement of the proteome …
[HTML][HTML] Pathways to cellular supremacy in biocomputing
Synthetic biology uses living cells as the substrate for performing human-defined computations.
Many current implementations of cellular computing are based on the “genetic circuit” …
Many current implementations of cellular computing are based on the “genetic circuit” …
A minimal model of ribosome allocation dynamics captures trade-offs in expression between endogenous and synthetic genes
TE Gorochowski, I Avcilar-Kucukgoze… - ACS synthetic …, 2016 - ACS Publications
Cells contain a finite set of resources that must be distributed across many processes to ensure
survival. Among them, the largest proportion of cellular resources is dedicated to protein …
survival. Among them, the largest proportion of cellular resources is dedicated to protein …
Agent-based modelling in synthetic biology
TE Gorochowski - Essays in biochemistry, 2016 - portlandpress.com
Biological systems exhibit complex behaviours that emerge at many different levels of
organization. These span the regulation of gene expression within single cells to the use of …
organization. These span the regulation of gene expression within single cells to the use of …
Genetic circuit characterization and debugging using RNA‐seq
TE Gorochowski, A Espah Borujeni, Y Park… - Molecular systems …, 2017 - embopress.org
Genetic circuits implement computational operations within a cell. Debugging them is difficult
because their function is defined by multiple states (eg, combinations of inputs) that vary in …
because their function is defined by multiple states (eg, combinations of inputs) that vary in …
[HTML][HTML] Towards an engineering theory of evolution
Biological technologies are fundamentally unlike any other because biology evolves.
Bioengineering therefore requires novel design methodologies with evolution at their core. …
Bioengineering therefore requires novel design methodologies with evolution at their core. …