User profiles for Thomas E. Gorochowski

Thomas E. Gorochowski

Royal Society University Research Fellow / Associate Professor, University of Bristol
Verified email at bristol.ac.uk
Cited by 2584

Burden-driven feedback control of gene expression

F Ceroni, A Boo, S Furini, TE Gorochowski… - Nature …, 2018 - nature.com
Cells use feedback regulation to ensure robust growth despite fluctuating demands for
resources and differing environmental conditions. However, the expression of foreign proteins …

Towards the fully automated monitoring of ecological communities

M Besson, J Alison, K Bjerge, TE Gorochowski… - Ecology …, 2022 - Wiley Online Library
High‐resolution monitoring is fundamental to understand ecosystems dynamics in an era of
global change and biodiversity declines. While real‐time and automated monitoring of …

Synchronization and control of complex networks via contraction, adaptation and evolution

…, M Di Bernardo, TE Gorochowski… - IEEE Circuits and …, 2010 - ieeexplore.ieee.org
Complex networked systems abound in Nature and Technology. They consist of a multitude
of interacting agents communicating with each other over a web of complex interconnections…

[HTML][HTML] BSim: an agent-based tool for modeling bacterial populations in systems and synthetic biology

TE Gorochowski, A Matyjaszkiewicz, T Todd, N Oak… - 2012 - journals.plos.org
Large-scale collective behaviors such as synchronization and coordination spontaneously
arise in many bacterial populations. With systems biology attempting to understand these …

Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate

TE Gorochowski, Z Ignatova… - Nucleic acids …, 2015 - academic.oup.com
Translation of protein from mRNA is a complex multi-step process that occurs at a non-uniform
rate. Variability in ribosome speed along an mRNA enables refinement of the proteome …

[HTML][HTML] Pathways to cellular supremacy in biocomputing

L Grozinger, M Amos, TE Gorochowski… - Nature …, 2019 - nature.com
Synthetic biology uses living cells as the substrate for performing human-defined computations.
Many current implementations of cellular computing are based on the “genetic circuit” …

A minimal model of ribosome allocation dynamics captures trade-offs in expression between endogenous and synthetic genes

TE Gorochowski, I Avcilar-Kucukgoze… - ACS synthetic …, 2016 - ACS Publications
Cells contain a finite set of resources that must be distributed across many processes to ensure
survival. Among them, the largest proportion of cellular resources is dedicated to protein …

Agent-based modelling in synthetic biology

TE Gorochowski - Essays in biochemistry, 2016 - portlandpress.com
Biological systems exhibit complex behaviours that emerge at many different levels of
organization. These span the regulation of gene expression within single cells to the use of …

Genetic circuit characterization and debugging using RNA‐seq

TE Gorochowski, A Espah Borujeni, Y Park… - Molecular systems …, 2017 - embopress.org
Genetic circuits implement computational operations within a cell. Debugging them is difficult
because their function is defined by multiple states (eg, combinations of inputs) that vary in …

[HTML][HTML] Towards an engineering theory of evolution

SD Castle, CS Grierson, TE Gorochowski - Nature Communications, 2021 - nature.com
Biological technologies are fundamentally unlike any other because biology evolves.
Bioengineering therefore requires novel design methodologies with evolution at their core. …