User profiles for Thomas P. van Gurp
Thomas van GurpSolynta Verified email at solynta.com Cited by 835 |
Ecological plant epigenetics: Evidence from model and non‐model species, and the way forward
Growing evidence shows that epigenetic mechanisms contribute to complex traits, with
implications across many fields of biology. In plant ecology, recent studies have attempted to …
implications across many fields of biology. In plant ecology, recent studies have attempted to …
epiGBS: reference-free reduced representation bisulfite sequencing
TP van Gurp, NCAM Wagemaker, B Wouters… - Nature …, 2016 - nature.com
We describe epiGBS, a reduced representation bisulfite sequencing method for cost-effective
exploration and comparative analysis of DNA methylation and genetic variation in …
exploration and comparative analysis of DNA methylation and genetic variation in …
[HTML][HTML] Transgenerational effects of stress exposure on offspring phenotypes in apomictic dandelion
KJF Verhoeven, TP van Gurp - PloS one, 2012 - journals.plos.org
Heritable epigenetic modulation of gene expression is a candidate mechanism to explain
parental environmental effects on offspring phenotypes, but current evidence for environment-…
parental environmental effects on offspring phenotypes, but current evidence for environment-…
[HTML][HTML] Consistent errors in first strand cDNA due to random hexamer mispriming
Priming of random hexamers in cDNA synthesis is known to show sequence bias, but in
addition it has been suggested recently that mismatches in random hexamer priming could be a …
addition it has been suggested recently that mismatches in random hexamer priming could be a …
epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS‐based reduced representation bisulfite sequencing
…, B Sepers, S Fatma, TP van Gurp… - Molecular Ecology …, 2022 - Wiley Online Library
Several reduced‐representation bisulfite sequencing methods have been developed in recent
years to determine cytosine methylation de novo in nonmodel species. Here, we present …
years to determine cytosine methylation de novo in nonmodel species. Here, we present …
Intergenerational environmental effects: functional signals in offspring transcriptomes and metabolomes after parental jasmonic acid treatment in apomictic dandelion
Parental environments can influence offspring traits. However, the magnitude of the impact
of parental environments on offspring molecular phenotypes is poorly understood. Here, we …
of parental environments on offspring molecular phenotypes is poorly understood. Here, we …
[HTML][HTML] Recent and dynamic transposable elements contribute to genomic divergence under asexuality
… For each accession, following van Gurp et al. [40], reduced … analysis for methylation calling
followed van Gurp et al. [40]. … officinale genome constructed previously by van Gurp et al. […
followed van Gurp et al. [40]. … officinale genome constructed previously by van Gurp et al. […
msGBS: a new high‐throughput approach to quantify the relative species abundance in root samples of multispecies plant communities
Plant interactions are as important belowground as aboveground. Belowground plant
interactions are however inherently difficult to quantify, as roots of different species are difficult to …
interactions are however inherently difficult to quantify, as roots of different species are difficult to …
epiGBS2: An improved protocol and automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing
epiGBS is an existing reduced representation bisulfite sequencing method to determine
cytosine methylation and genetic polymorphisms de novo. Here, we present epiGBS2, an …
cytosine methylation and genetic polymorphisms de novo. Here, we present epiGBS2, an …
Measurement of patient safety: a systematic review of the reliability and validity of adverse event detection with record review
…, M Zegers, C Vincent, PJ van Gurp… - BMJ open, 2016 - bmjopen.bmj.com
Objectives Record review is the most used method to quantify patient safety. We systematically
reviewed the reliability and validity of adverse event detection with record review. Design …
reviewed the reliability and validity of adverse event detection with record review. Design …