Avoiding common pitfalls when clustering biological data

T Ronan, Z Qi, KM Naegle - Science signaling, 2016 - science.org
Clustering is an unsupervised learning method, which groups data points based on similarity,
and is used to reveal the underlying structure of data. This computational approach is …

Extraction of alcohols from water with 1-hexyl-3-methylimidazolium bis (trifluoromethylsulfonyl) imide

A Chapeaux, LD Simoni, TS Ronan, MA Stadtherr… - Green …, 2008 - pubs.rsc.org
Ethanol production in the US has increased 36% between 2006 and 2007 (JM Urbanchuk,
Contribution of the Ethanol Industry to the Economy of the United States, LECG, LLC, …

[HTML][HTML] Different Epidermal Growth Factor Receptor (EGFR) Agonists Produce Unique Signatures for the Recruitment of Downstream Signaling Proteins*♦

T Ronan, JL Macdonald-Obermann… - Journal of Biological …, 2016 - ASBMB
The EGF receptor can bind seven different agonist ligands. Although each agonist appears
to stimulate the same suite of downstream signaling proteins, different agonists are capable …

Openensembles: a python resource for ensemble clustering

T Ronan, S Anastasio, Z Qi, PHSV Tavares… - Journal of Machine …, 2018 - jmlr.org
In this paper we introduce OpenEnsembles, a Python toolkit for performing and analyzing
ensemble clustering. Ensemble clustering is the process of creating many clustering solutions …

[HTML][HTML] Transcription factor binding sites are highly enriched within microRNA precursor sequences

J Piriyapongsa, IK Jordan, AB Conley, T Ronan… - Biology Direct, 2011 - Springer
Background Transcription factors are thought to regulate the transcription of microRNA
genes in a manner similar to that of protein-coding genes; that is, by binding to conventional …

Miocene glaciomarine sediments from beneath the southern Ross Ice Shelf, Antarctica

PN Webb, TE Ronan Jr, JH Lipps, TE DeLaca - Science, 1979 - science.org
Glaciomarine sediments with middle Miocene microfaunal assemblages are exposed at the
sea floor below the southern Ross Ice Shelf. Plio-Pleistocene sediments are not present. …

[HTML][HTML] Function of the C. elegans T-box factor TBX-2 depends on SUMOylation

P Huber, T Crum, LM Clary, T Ronan… - Cellular and molecular …, 2013 - Springer
T-box transcription factors are critical developmental regulators in all multi-cellular organisms,
and altered T-box factor activity is associated with a variety of human congenital diseases …

Formation and paleontologic recognition of structures caused by marine annelids

TE Ronan - Paleobiology, 1977 - cambridge.org
Laboratory and field collected sediments were x-rayed to document the array of biogenic
sedimentary structures produced by the burrowing and feeding behavior of six species of …

FOOD-RESOURCES AND THE INFLUENCE OF SPATIAL PATTERN ON FEEDING IN THE PHORONID PHORONOPSIS VIRIDIS

TE Ronan Jr - The Biological Bulletin, 1978 - journals.uchicago.edu
1. In the intertidal zone of Bodega Harbor, California, the phoronid, Phoronopsis viridis,
aggregates in clusters often composed of thousands of tightly aggregated individuals (up to …

Organism-sediment relationships on a modern tidal flat, Bodega Harbor, California

TE Ronan Jr, MF Miller, JD Farmer - 1981 - archives.datapages.com
Purpose The purpose of the Bodega Harbor portion of this guidebook is fivefold: 1) to briefly
describe the physical and geological setting of Bodega Harbor, 2) to discuss sediment …