User profiles for Tom van den Bergh

Tom van den Bergh

Bio-Prodict
Verified email at bio-prodict.nl
Cited by 691

Bioinformatic analysis of a PLP-dependent enzyme superfamily suitable for biocatalytic applications

…, H Mallin, A Nobili, L Skalden, T van den Bergh… - Biotechnology …, 2015 - Elsevier
In this review we analyse structure/sequence–function relationships for the superfamily of
PLP-dependent enzymes with special emphasis on class III transaminases. Amine …

A structural classification of carbohydrate epimerases: from mechanistic insights to practical applications

…, T Verhaeghe, HJ Joosten, T van den Bergh… - Biotechnology …, 2015 - Elsevier
In recent years, carbohydrate epimerases have attracted a lot of attention as efficient biocatalysts
that can convert abundant sugars (eg d-fructose) directly into rare counterparts (eg d-…

[HTML][HTML] Drug design for ever, from hype to hope

…, V Lounnas, R McGuire, T van den Bergh… - Journal of computer …, 2012 - Springer
In its first 25 years JCAMD has been disseminating a large number of techniques aimed at
finding better medicines faster. These include genetic algorithms, COMFA, QSAR, structure …

Switch in cofactor specificity of a baeyer–villiger monooxygenase

…, M Genz, S Schmidt, T Van Den Bergh… - …, 2016 - Wiley Online Library
Baeyer–Villiger monooxygenases (BVMOs) catalyze the oxidation of ketones to esters or
lactones by using molecular oxygen and a cofactor. Type I BVMOs display a strong preference …

Engineering the Amine Transaminase from Vibrio fluvialis towards Branched‐Chain Substrates

…, C Vickers, M Dörr, T Van Den Bergh… - …, 2016 - Wiley Online Library
Chiral amines are important building blocks, especially for the pharmaceutical industry.
Although amine transaminases (ATAs) are versatile enzymes to synthesize chiral amines, the …

Going to extremes–a metagenomic journey into the dark matter of life

…, P Terzian, M Tourigny, T Bergh… - FEMS microbiology …, 2021 - academic.oup.com
The Virus-X—Viral Metagenomics for Innovation Value—project was a scientific expedition
to explore and exploit uncharted territory of genetic diversity in extreme natural environments …

[HTML][HTML] Alteration of the Donor/Acceptor Spectrum of the (S)-Amine Transaminase from Vibrio fluvialis

M Genz, C Vickers, T Van den Bergh… - International journal of …, 2015 - mdpi.com
To alter the amine donor/acceptor spectrum of an (S)-selective amine transaminase (ATA),
a library based on the Vibrio fluvialis ATA targeting four residues close to the active site (L56, …

[HTML][HTML] Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily

…, K Steiner, B Darnhofer, J Hartler, T Van Den Bergh… - Scientific Reports, 2017 - nature.com
Homology and similarity based approaches are most widely used for the identification of new
enzymes for biocatalysis. However, they are not suitable to find truly novel scaffolds with a …

AmiP from hyperthermophilic Thermus parvatiensis prophage is a thermoactive and ultrathermostable peptidoglycan lytic amidase

…, J Lange, H Watzlawick, T van den Bergh… - Protein …, 2023 - Wiley Online Library
Bacteriophages encode a wide variety of cell wall disrupting enzymes that aid the viral
escape in the final stages of infection. These lytic enzymes have accumulated notable interest …

Simultaneous use of in silico design and a correlated mutation network as a tool to efficiently guide enzyme engineering

A Nobili, Y Tao, IV Pavlidis, T van den Bergh… - …, 2015 - Wiley Online Library
In order to improve the efficiency of directed evolution experiments, in silico multiple‐substrate
clustering was combined with an analysis of the variability of natural enzymes within a …