User profiles for Tom van den Bergh
Tom van den BerghBio-Prodict Verified email at bio-prodict.nl Cited by 691 |
Bioinformatic analysis of a PLP-dependent enzyme superfamily suitable for biocatalytic applications
…, H Mallin, A Nobili, L Skalden, T van den Bergh… - Biotechnology …, 2015 - Elsevier
In this review we analyse structure/sequence–function relationships for the superfamily of
PLP-dependent enzymes with special emphasis on class III transaminases. Amine …
PLP-dependent enzymes with special emphasis on class III transaminases. Amine …
A structural classification of carbohydrate epimerases: from mechanistic insights to practical applications
…, T Verhaeghe, HJ Joosten, T van den Bergh… - Biotechnology …, 2015 - Elsevier
In recent years, carbohydrate epimerases have attracted a lot of attention as efficient biocatalysts
that can convert abundant sugars (eg d-fructose) directly into rare counterparts (eg d-…
that can convert abundant sugars (eg d-fructose) directly into rare counterparts (eg d-…
[HTML][HTML] Drug design for ever, from hype to hope
…, V Lounnas, R McGuire, T van den Bergh… - Journal of computer …, 2012 - Springer
In its first 25 years JCAMD has been disseminating a large number of techniques aimed at
finding better medicines faster. These include genetic algorithms, COMFA, QSAR, structure …
finding better medicines faster. These include genetic algorithms, COMFA, QSAR, structure …
Switch in cofactor specificity of a baeyer–villiger monooxygenase
…, M Genz, S Schmidt, T Van Den Bergh… - …, 2016 - Wiley Online Library
Baeyer–Villiger monooxygenases (BVMOs) catalyze the oxidation of ketones to esters or
lactones by using molecular oxygen and a cofactor. Type I BVMOs display a strong preference …
lactones by using molecular oxygen and a cofactor. Type I BVMOs display a strong preference …
Engineering the Amine Transaminase from Vibrio fluvialis towards Branched‐Chain Substrates
…, C Vickers, M Dörr, T Van Den Bergh… - …, 2016 - Wiley Online Library
Chiral amines are important building blocks, especially for the pharmaceutical industry.
Although amine transaminases (ATAs) are versatile enzymes to synthesize chiral amines, the …
Although amine transaminases (ATAs) are versatile enzymes to synthesize chiral amines, the …
Going to extremes–a metagenomic journey into the dark matter of life
The Virus-X—Viral Metagenomics for Innovation Value—project was a scientific expedition
to explore and exploit uncharted territory of genetic diversity in extreme natural environments …
to explore and exploit uncharted territory of genetic diversity in extreme natural environments …
[HTML][HTML] Alteration of the Donor/Acceptor Spectrum of the (S)-Amine Transaminase from Vibrio fluvialis
M Genz, C Vickers, T Van den Bergh… - International journal of …, 2015 - mdpi.com
To alter the amine donor/acceptor spectrum of an (S)-selective amine transaminase (ATA),
a library based on the Vibrio fluvialis ATA targeting four residues close to the active site (L56, …
a library based on the Vibrio fluvialis ATA targeting four residues close to the active site (L56, …
[HTML][HTML] Enzyme discovery beyond homology: a unique hydroxynitrile lyase in the Bet v1 superfamily
Homology and similarity based approaches are most widely used for the identification of new
enzymes for biocatalysis. However, they are not suitable to find truly novel scaffolds with a …
enzymes for biocatalysis. However, they are not suitable to find truly novel scaffolds with a …
AmiP from hyperthermophilic Thermus parvatiensis prophage is a thermoactive and ultrathermostable peptidoglycan lytic amidase
…, J Lange, H Watzlawick, T van den Bergh… - Protein …, 2023 - Wiley Online Library
Bacteriophages encode a wide variety of cell wall disrupting enzymes that aid the viral
escape in the final stages of infection. These lytic enzymes have accumulated notable interest …
escape in the final stages of infection. These lytic enzymes have accumulated notable interest …
Simultaneous use of in silico design and a correlated mutation network as a tool to efficiently guide enzyme engineering
In order to improve the efficiency of directed evolution experiments, in silico multiple‐substrate
clustering was combined with an analysis of the variability of natural enzymes within a …
clustering was combined with an analysis of the variability of natural enzymes within a …