User profiles for Tomislav Šmuc

Tomislav Šmuc

Senior scientist, Rudjer Boskovic Institute, Zagreb, Croatia
Verified email at irb.hr
Cited by 9253

[HTML][HTML] REVIGO summarizes and visualizes long lists of gene ontology terms

F Supek, M Bošnjak, N Škunca, T Šmuc - PloS one, 2011 - journals.plos.org
Outcomes of high-throughput biological experiments are typically interpreted by statistical
testing for enriched gene functional categories defined by the Gene Ontology (GO). The …

[HTML][HTML] A large-scale evaluation of computational protein function prediction

…, F Supek, M Bošnjak, P Panov, S Džeroski, T Šmuc… - Nature …, 2013 - nature.com
Automated annotation of protein function is challenging. As the number of sequenced
genomes rapidly grows, the overwhelming majority of protein products can only be annotated …

Identification of patient zero in static and temporal networks: Robustness and limitations

N Antulov-Fantulin, A Lančić, T Šmuc, H Štefančić… - Physical review …, 2015 - APS
Detection of patient zero can give new insights to epidemiologists about the nature of first
transmissions into a population. In this Letter, we study the statistical inference problem of …

The landscape of microbial phenotypic traits and associated genes

…, M Piškorec, V Vidulin, A Kriško, T Šmuc… - Nucleic acids …, 2016 - academic.oup.com
Bacteria and Archaea display a variety of phenotypic traits and can adapt to diverse ecological
niches. However, systematic annotation of prokaryotic phenotypes is lacking. We have …

[HTML][HTML] Translational selection is ubiquitous in prokaryotes

…, N Škunca, J Repar, K Vlahoviček, T Šmuc - PLoS genetics, 2010 - journals.plos.org
Codon usage bias in prokaryotic genomes is largely a consequence of background substitution
patterns in DNA, but highly expressed genes may show a preference towards codons …

Antitumor potential of crown ethers: structure− activity relationships, cell cycle disturbances, and cell death studies of a series of ionophores

…, F Supek, L Frkanec, I Piantanida, T Šmuc… - Journal of medicinal …, 2007 - ACS Publications
The present paper demonstrates the antiproliferative ability and structure−activity relationships
(SAR) of 14 crown and aza-crown ether analogues on five tumor-cell types. The most …

[HTML][HTML] Comprehensive machine learning based study of the chemical space of herbicides

D Oršolić, V Pehar, T Šmuc, V Stepanić - Scientific reports, 2021 - nature.com
Widespread use of herbicides results in the global increase in weed resistance. The
rotational use of herbicides according to their modes of action (MoAs) and discovery of novel …

Accurate models for P-gp drug recognition induced from a cancer cell line cytotoxicity screen

J Levatic, J Curak, M Kralj, T Smuc… - Journal of medicinal …, 2013 - ACS Publications
P-glycoprotein (P-gp, MDR1) is a promiscuous drug efflux pump of substantial pharmacological
importance. Taking advantage of large-scale cytotoxicity screening data involving 60 …

Reference intervals for organically raised sheep: Effects of breed, location and season on hematological and biochemical parameters

M Šimpraga, T Šmuc, K Matanović, L Radin… - Small ruminant …, 2013 - Elsevier
Hematological and biochemical tests are widely used for assessment of health status and
diagnosis of disease in domestic animals. They are almost indispensible in health …

Dynamic applicability domain (dAD): compound–target binding affinity estimates with local conformal prediction

D Oršolić, T Šmuc - Bioinformatics, 2023 - academic.oup.com
Motivation Increasing efforts are being made in the field of machine learning to advance the
learning of robust and accurate models from experimentally measured data and enable …