User profiles for Tramy T. Nguyen
 | Tramy NguyenRaytheon BBN Technologies Verified email at raytheon.com Cited by 822 |
Robustness and reproducibility of simple and complex synthetic logic circuit designs using a DBTL loop
Computational tools addressing various components of design–build–test–learn (DBTL)
loops for the construction of synthetic genetic networks exist but do not generally cover the …
loops for the construction of synthetic genetic networks exist but do not generally cover the …
Round trip: an automated pipeline for experimental design, execution, and analysis
Synthetic biology is a complex discipline that involves creating detailed, purpose-built
designs from genetic parts. This process is often phrased as a Design-Build-Test-Learn loop, …
designs from genetic parts. This process is often phrased as a Design-Build-Test-Learn loop, …
Computational prediction of synthetic circuit function across growth conditions
A challenge in the design and construction of synthetic genetic circuits is that they will operate
within biological systems that have noisy and changing parameter regimes that are largely …
within biological systems that have noisy and changing parameter regimes that are largely …
[PDF][PDF] Asynchronous Genetic Circuit Design
TT Nguyen - 2019 - geneticlogiclab.org
Synthetic biology is applying engineering concepts to biological processes to enable genetic
circuit designs, among other applications. As more biological parts are being discovered, it …
circuit designs, among other applications. As more biological parts are being discovered, it …
[PDF][PDF] Intent parser: a tool for codifying experiment design
T Nguyen, N Walczak, J Beal… - … Workshop on Bio …, 2020 - jakebeal.github.io
2 INTENT PARSER ARCHITECTURE Fundamentally, the Intent Parser acts as a link between
a user-friendly document editor (in this case Google Docs) and a repository of formal de …
a user-friendly document editor (in this case Google Docs) and a repository of formal de …
SBML Level 3: an extensible format for the exchange and reuse of biological models
Abstract Systems biology has experienced dramatic growth in the number, size, and
complexity of computational models. To reproduce simulation results and reuse models, …
complexity of computational models. To reproduce simulation results and reuse models, …
iBioSim 3: A Tool for Model-Based Genetic Circuit Design
The iBioSim tool has been developed to facilitate the design of genetic circuits via a model-based
design strategy. This paper illustrates the new features incorporated into the tool for …
design strategy. This paper illustrates the new features incorporated into the tool for …
A computational workflow for the automated generation of models of genetic designs
Computational models are essential to engineer predictable biological systems and to scale
up this process for complex systems. Computational modeling often requires expert …
up this process for complex systems. Computational modeling often requires expert …
Sharing structure and function in biological design with SBOL 2.0
The Synthetic Biology Open Language (SBOL) is a standard that enables collaborative
engineering of biological systems across different institutions and tools. SBOL is developed …
engineering of biological systems across different institutions and tools. SBOL is developed …
Design of asynchronous genetic circuits
T Nguyen, TS Jones, P Fontanarrosa… - Proceedings of the …, 2019 - ieeexplore.ieee.org
… The work of T. Nguyen, JV Mante, and CJ Myers was supported by the National Science
Foundation under Grant CCF-1748200. The work of T. …
Foundation under Grant CCF-1748200. The work of T. …