The SAMPL6 SAMPLing challenge: assessing the reliability and efficiency of binding free energy calculations
Approaches for computing small molecule binding free energies based on molecular
simulations are now regularly being employed by academic and industry practitioners to study …
simulations are now regularly being employed by academic and industry practitioners to study …
[HTML][HTML] Genetic tools for advancement of Synechococcus sp. PCC 7002 as a cyanobacterial chassis
AM Ruffing, TJ Jensen, LM Strickland - Microbial Cell Factories, 2016 - Springer
Background Successful implementation of modified cyanobacteria as hosts for industrial
applications requires the development of a cyanobacterial chassis. The cyanobacterium …
applications requires the development of a cyanobacterial chassis. The cyanobacterium …
[HTML][HTML] Cell-based systems biology analysis of human AS03-adjuvanted H5N1 avian influenza vaccine responses: a phase I randomized controlled trial
…, X Niu, LE Gordy, CB Creech, N Prasad, TL Jensen… - PLoS …, 2017 - journals.plos.org
Background Vaccine development for influenza A/H5N1 is an important public health priority,
but H5N1 vaccines are less immunogenic than seasonal influenza vaccines. Adjuvant …
but H5N1 vaccines are less immunogenic than seasonal influenza vaccines. Adjuvant …
[HTML][HTML] Failure to detect mutations in U2AF1 due to changes in the GRCh38 reference sequence
The U2AF1 gene is a core part of mRNA splicing machinery and frequently contains somatic
mutations that contribute to oncogenesis in myelodysplastic syndrome, acute myeloid …
mutations that contribute to oncogenesis in myelodysplastic syndrome, acute myeloid …
[HTML][HTML] The antibody landscapes following AS03 and MF59 adjuvanted H5N1 vaccination
JB Goll, A Jain, TL Jensen, R Assis, R Nakajima… - npj Vaccines, 2022 - nature.com
Current seasonal and pre-pandemic influenza vaccines induce short-lived predominantly
strain-specific and limited heterosubtypic responses. To better understand how vaccine …
strain-specific and limited heterosubtypic responses. To better understand how vaccine …
Adaptive ensemble biomolecular applications at scale
Recent advances in both theory and methods have created opportunities to simulate
biomolecular processes more efficiently using adaptive ensemble simulations. Ensemble-based …
biomolecular processes more efficiently using adaptive ensemble simulations. Ensemble-based …
[HTML][HTML] Systems vaccinology for a live attenuated tularemia vaccine reveals unique transcriptional signatures that predict humoral and cellular immune responses
Background: Tularemia is a potential biological weapon due to its high infectivity and ease
of dissemination. This study aimed to characterize the innate and adaptive responses …
of dissemination. This study aimed to characterize the innate and adaptive responses …
Molecular evolution of herpes simplex virus 2 complete genomes: comparison between primary and recurrent infections
Herpes simplex virus 1 (HSV-1) and HSV-2 are large, double-stranded DNA viruses that
cause lifelong persistent infections characterized by periods of quiescence and recurrent …
cause lifelong persistent infections characterized by periods of quiescence and recurrent …
Human antibody responses following vaccinia immunization using protein microarrays and correlation with cell-mediated immunity and antibody-dependent cellular …
…, TM Kaufman, TP Blevins, TL Jensen… - The Journal of …, 2021 - academic.oup.com
Background There are limited data regarding immunological correlates of protection for the
modified vaccinia Ankara (MVA) smallpox vaccine. Methods A total of 523 vaccinia-naive …
modified vaccinia Ankara (MVA) smallpox vaccine. Methods A total of 523 vaccinia-naive …
[HTML][HTML] Transcriptomic and Metabolic Responses to a Live-Attenuated Francisella tularensis Vaccine
The immune response to live-attenuated Francisella tularensis vaccine and its host evasion
mechanisms are incompletely understood. Using RNA-Seq and LC–MS on samples …
mechanisms are incompletely understood. Using RNA-Seq and LC–MS on samples …