User profiles for Upendra K Devisetty
Upendra Kumar DevisettyHead of Data Science Verified email at greenlightbio.com Cited by 1931 |
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
…, MF Covington, UK Devisetty… - Proceedings of the …, 2013 - National Acad Sciences
Although applied over extremely short timescales, artificial selection has dramatically altered
the form, physiology, and life history of cultivated plants. We have used RNAseq to define …
the form, physiology, and life history of cultivated plants. We have used RNAseq to define …
Accurate timekeeping is controlled by a cycling activator in Arabidopsis
10.7554/eLife.00473.001 Transcriptional feedback loops are key to circadian clock function
in many organisms. Current models of the Arabidopsis circadian network consist of several …
in many organisms. Current models of the Arabidopsis circadian network consist of several …
[HTML][HTML] Shade avoidance components and pathways in adult plants revealed by phenotypic profiling
K Nozue, AV Tat, U Kumar Devisetty, M Robinson… - PLoS …, 2015 - journals.plos.org
Shade from neighboring plants limits light for photosynthesis; as a consequence, plants
have a variety of strategies to avoid canopy shade and compete with their neighbors for light. …
have a variety of strategies to avoid canopy shade and compete with their neighbors for light. …
[HTML][HTML] The Divergence of Flowering Time Modulated by FT/TFL1 Is Independent to Their Interaction and Binding Activities
Z Wang, R Yang, UK Devisetty, JN Maloof… - Frontiers in Plant …, 2017 - frontiersin.org
FLOWERING LOCUS T (FT) and TERMINAL FLOWER1 (TFL1) proteins share highly conserved
amino acid residues but they play opposite regulatory roles in promoting and repressing …
amino acid residues but they play opposite regulatory roles in promoting and repressing …
[HTML][HTML] Bringing your tools to CyVerse discovery environment using Docker
UK Devisetty, K Kennedy, P Sarando, N Merchant… - …, 2016 - ncbi.nlm.nih.gov
Docker has become a very popular container-based virtualization platform for software
distribution that has revolutionized the way in which scientific software and software …
distribution that has revolutionized the way in which scientific software and software …
Network analysis reveals a role for salicylic acid pathway components in shade avoidance
K Nozue, UK Devisetty, S Lekkala… - Plant …, 2018 - academic.oup.com
Plants have sophisticated mechanisms for sensing neighbor shade. To maximize their
ability to compete for light, plants respond to shade through enhanced elongation and …
ability to compete for light, plants respond to shade through enhanced elongation and …
The role of a class III gibberellin 2‐oxidase in tomato internode elongation
A Schrager‐Lavelle, NN Gath, UK Devisetty… - The Plant …, 2019 - Wiley Online Library
A network of environmental inputs and internal signaling controls plant growth, development
and organ elongation. In particular, the growth‐promoting hormone gibberellin ( GA ) has …
and organ elongation. In particular, the growth‐promoting hormone gibberellin ( GA ) has …
[HTML][HTML] Evolinc: a tool for the identification and evolutionary comparison of long intergenic non-coding RNAs
Long intergenic non-coding RNAs (lincRNAs) are an abundant and functionally diverse
class of eukaryotic transcripts. Reported lincRNA repertoires in mammals vary, but are …
class of eukaryotic transcripts. Reported lincRNA repertoires in mammals vary, but are …
A genomic analysis of factors driving lincRNA diversification: lessons from plants
Transcriptomic analyses from across eukaryotes indicate that most of the genome is
transcribed at some point in the developmental trajectory of an organism. One class of these …
transcribed at some point in the developmental trajectory of an organism. One class of these …
[HTML][HTML] Read mapping and transcript assembly: a scalable and high-throughput workflow for the processing and analysis of ribonucleic acid sequencing data
Next-generation RNA-sequencing is an incredibly powerful means of generating a snapshot
of the transcriptomic state within a cell, tissue, or whole organism. As the questions …
of the transcriptomic state within a cell, tissue, or whole organism. As the questions …