User profiles for Vadim Puller
Vadim PullerGMT Science Verified email at gmt.bio Cited by 1465 |
TreeTime: Maximum-likelihood phylodynamic analysis
Mutations that accumulate in the genome of cells or viruses can be used to infer their
evolutionary history. In the case of rapidly evolving organisms, genomes can reveal their detailed …
evolutionary history. In the case of rapidly evolving organisms, genomes can reveal their detailed …
In vivo mutation rates and the landscape of fitness costs of HIV-1
Mutation rates and fitness costs of deleterious mutations are difficult to measure in vivo but
essential for a quantitative understanding of evolution. Using whole genome deep …
essential for a quantitative understanding of evolution. Using whole genome deep …
[HTML][HTML] Estimating time of HIV-1 infection from next-generation sequence diversity
Estimating the time since infection (TI) in newly diagnosed HIV-1 patients is challenging, but
important to understand the epidemiology of the infection. Here we explore the utility of virus …
important to understand the epidemiology of the infection. Here we explore the utility of virus …
Single molecule detection of nanomechanical motion
We investigate theoretically how single molecule spectroscopy techniques can be used to
perform fast and high resolution displacement detection and manipulation of nanomechanical …
perform fast and high resolution displacement detection and manipulation of nanomechanical …
Scaling laws for the bifurcation escape rate in a nanomechanical resonator
We report on experimental and theoretical studies of the fluctuation-induced escape time from
a metastable state of a nanomechanical Duffing resonator in a cryogenic environment. By …
a metastable state of a nanomechanical Duffing resonator in a cryogenic environment. By …
Electron spin relaxation in a semiconductor quantum well
A fully microscopic theory of electron spin relaxation by the D’yakonov-Perel’type spin-orbit
coupling is developed for a semiconductor quantum well in an ambient magnetic field …
coupling is developed for a semiconductor quantum well in an ambient magnetic field …
Optimizing culture conditions for free-living stages of the nematode parasite Strongyloides ratti
A Dulovic, V Puller, A Streit - Experimental parasitology, 2016 - Elsevier
The rat parasitic nematode Strongyloides ratti (S. ratti) has recently emerged as a model
system for various aspects of parasite biology and evolution. In addition to parasitic …
system for various aspects of parasite biology and evolution. In addition to parasitic …
Breaking of phase symmetry in nonequilibrium Aharonov-Bohm oscillations through a quantum dot
Linear-response conductance of a two-terminal Aharonov-Bohm (AB) interferometer is an
even function of magnetic field. This phase symmetry is not expected to hold beyond the linear-…
even function of magnetic field. This phase symmetry is not expected to hold beyond the linear-…
Efficient inference, potential, and limitations of site-specific substitution models
Natural selection imposes a complex filter on which variants persist in a population resulting
in evolutionary patterns that vary greatly along the genome. Some sites evolve close to …
in evolutionary patterns that vary greatly along the genome. Some sites evolve close to …
How to measure the transmission phase through a quantum dot in a two-terminal interferometer
Measurement of the transmission phase through a quantum dot (QD) embedded in an arm
of a two-terminal Aharonov-Bohm (AB) interferometer is inhibited by phase symmetry, ie, the …
of a two-terminal Aharonov-Bohm (AB) interferometer is inhibited by phase symmetry, ie, the …