[HTML][HTML] Systematic benchmark of state-of-the-art variant calling pipelines identifies major factors affecting accuracy of coding sequence variant discovery

YA Barbitoff, R Abasov, VE Tvorogova, AS Glotov… - BMC genomics, 2022 - Springer
Background Accurate variant detection in the coding regions of the human genome is a key
requirement for molecular diagnostics of Mendelian disorders. Efficiency of variant discovery …

The WUSCHEL-related homeobox transcription factor MtWOX9-1 stimulates somatic embryogenesis in Medicago truncatula

VE Tvorogova, YA Fedorova… - Plant Cell, Tissue and …, 2019 - Springer
Somatic embryogenesis is widely used in plant biotechnology, but regulatory networks
underlying this process are not fully understood. This process is regulated by many protein and …

[HTML][HTML] Identification, expression, and functional analysis of CLE genes in radish (Raphanus sativus L.) storage root

…, IE Dodueva, MA Lebedeva, VE Tvorogova… - BMC plant biology, 2016 - Springer
Background Radish (Raphanus sativus L.) is a widespread agricultural plant forming
storage root due to extensive secondary growth which involves cambium proliferation and …

WOX9 functions antagonistic to STF and LAM1 to regulate leaf blade expansion in Medicago truncatula and Nicotiana sylvestris

…, F Zhang, M Behzadirad, VE Tvorogova… - new …, 2021 - Wiley Online Library
WOX family transcription factors regulate multiple developmental programs. The
intermediate clade transcriptional activator WOX9 functions together with the modern clade …

[HTML][HTML] MtCLE08, MtCLE16, and MtCLE18 Transcription Patterns and Their Possible Functions in the Embryogenic Calli of Medicago truncatula

…, NS Zlydneva, EP Efremova, VE Tvorogova… - Plants, 2023 - mdpi.com
CLE peptides are well-known hormonal regulators of plant development, but their role in
somatic embryogenesis remains undetermined. CLE genes are often regulated by WOX …

Initiation of spontaneous tumors in radish (Raphanus sativus): Cellular, molecular and physiological events

MA Lebedeva, VE Tvorogova, AP Vinogradova… - Journal of plant …, 2015 - Elsevier
In plant meristems, the balance of cell proliferation and differentiation is maintained by
phytohormones, specifically auxin and cytokinin, as well as transcription factors. Changing of the …

Transcriptome analysis of crown gall in radish (Raphanus sativus L.) inbred lines

…, MS Gancheva, VE Tvorogova… - Annals of Applied …, 2021 - Wiley Online Library
Studying aberrations of normal developmental processes like plant tumour initiation provides
a great opportunity for understanding of systemic control of plant cells differentiation. Most …

The WOX Genes from the Intermediate Clade: Influence on the Somatic Embryogenesis in Medicago truncatula

…, VY Simonova, ZS Konstantinov, VE Tvorogova… - Plants, 2024 - mdpi.com
Transcription factors from the WOX family are well-known regulators of cell proliferation and
differentiation in plants. Herein, we focused on several WOX genes from the intermediate …

[HTML][HTML] MtWOX2 and MtWOX9-1 Effects on the Embryogenic Callus Transcriptome in Medicago truncatula

EY Krasnoperova, VE Tvorogova, KV Smirnov… - Plants, 2023 - mdpi.com
WOX family transcription factors are well-known regulators of plant development, controlling
cell proliferation and differentiation in diverse organs and tissues. Several WOX genes have …

Interaction between transcriptional factors and phytohormones in regulation of plant meristems activity

VE Tvorogova, MA Osipova, IE Dodueva… - Ecological …, 2012 - journals.eco-vector.com
Plant growth and development are controlled by large regulatory network which modulates
activity of special groups of cells—apical meristems. This control is performed by means of …