User profiles for Vedran Franke
Vedran FrankeMax Delbrueck Center Verified email at mdc-berlin.de Cited by 2732 |
Genomation: a toolkit to summarize, annotate and visualize genomic intervals
Biological insights can be obtained through computational integration of genomics data sets
consisting of diverse types of information. The integration is often hampered by a large …
consisting of diverse types of information. The integration is often hampered by a large …
[HTML][HTML] A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes
M Flemr, R Malik, V Franke, J Nejepinska, R Sedlacek… - Cell, 2013 - cell.com
In mammals, a single Dicer participates in biogenesis of small RNAs in microRNA (miRNA)
and RNAi pathways. In mice, endogenous RNAi is highly active in oocytes, but not in somatic …
and RNAi pathways. In mice, endogenous RNAi is highly active in oocytes, but not in somatic …
[HTML][HTML] Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy
Detailed knowledge of the molecular biology of severe acute respiratory syndrome coronavirus
2 (SARS-CoV-2) infection is crucial for understanding of viral replication, host responses, …
2 (SARS-CoV-2) infection is crucial for understanding of viral replication, host responses, …
[HTML][HTML] Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells
Syncytial skeletal muscle cells contain hundreds of nuclei in a shared cytoplasm. We investigated
nuclear heterogeneity and transcriptional dynamics in the uninjured and regenerating …
nuclear heterogeneity and transcriptional dynamics in the uninjured and regenerating …
[HTML][HTML] RNA localization is a key determinant of neurite-enriched proteome
…, D Van Den Bruck, C Ciolli Mattioli, V Franke… - Nature …, 2017 - nature.com
Protein subcellular localization is fundamental to the establishment of the body axis, cell
migration, synaptic plasticity, and a vast range of other biological processes. Protein localization …
migration, synaptic plasticity, and a vast range of other biological processes. Protein localization …
[HTML][HTML] Cell-type specialization is encoded by specific chromatin topologies
The three-dimensional (3D) structure of chromatin is intrinsically associated with gene
regulation and cell function 1 , 2 – 3 . Methods based on chromatin conformation capture have …
regulation and cell function 1 , 2 – 3 . Methods based on chromatin conformation capture have …
[HTML][HTML] A cohesin-independent role for NIPBL at promoters provides insights in CdLS
J Zuin, V Franke, WFJ van IJcken, A Van Der Sloot… - PLoS …, 2014 - journals.plos.org
The cohesin complex is crucial for chromosome segregation during mitosis and has recently
also been implicated in transcriptional regulation and chromatin architecture. The NIPBL …
also been implicated in transcriptional regulation and chromatin architecture. The NIPBL …
The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3′ processing
K Abe, R Yamamoto, V Franke, M Cao, Y Suzuki… - The EMBO …, 2015 - embopress.org
Initiation of zygotic transcription in mammals is poorly understood. In mice, zygotic transcription
is first detected shortly after pronucleus formation in 1‐cell embryos, but the identity of the …
is first detected shortly after pronucleus formation in 1‐cell embryos, but the identity of the …
Sculpting the transcriptome during the oocyte-to-embryo transition in mouse
In mouse, the oocyte-to-embryo transition entails converting a highly differentiated oocyte to
totipotent blastomeres. This transition is driven by degradation of maternal mRNAs, which …
totipotent blastomeres. This transition is driven by degradation of maternal mRNAs, which …
Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention
The coronavirus disease 2019 (COVID-19) pandemic, caused by the novel severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), is an ongoing global health threat with …
respiratory syndrome coronavirus 2 (SARS-CoV-2), is an ongoing global health threat with …