User profiles for Vedran Franke

Vedran Franke

Max Delbrueck Center
Verified email at mdc-berlin.de
Cited by 2732

Genomation: a toolkit to summarize, annotate and visualize genomic intervals

A Akalin, V Franke, K Vlahoviček, CE Mason… - …, 2015 - academic.oup.com
Biological insights can be obtained through computational integration of genomics data sets
consisting of diverse types of information. The integration is often hampered by a large …

[HTML][HTML] A retrotransposon-driven dicer isoform directs endogenous small interfering RNA production in mouse oocytes

M Flemr, R Malik, V Franke, J Nejepinska, R Sedlacek… - Cell, 2013 - cell.com
In mammals, a single Dicer participates in biogenesis of small RNAs in microRNA (miRNA)
and RNAi pathways. In mice, endogenous RNAi is highly active in oocytes, but not in somatic …

[HTML][HTML] Transcriptomic profiling of SARS-CoV-2 infected human cell lines identifies HSP90 as target for COVID-19 therapy

E Wyler, K Mösbauer, V Franke, A Diag, LT Gottula… - IScience, 2021 - Elsevier
Detailed knowledge of the molecular biology of severe acute respiratory syndrome coronavirus
2 (SARS-CoV-2) infection is crucial for understanding of viral replication, host responses, …

[HTML][HTML] Single-nucleus transcriptomics reveals functional compartmentalization in syncytial skeletal muscle cells

M Kim, V Franke, B Brandt, ED Lowenstein… - Nature …, 2020 - nature.com
Syncytial skeletal muscle cells contain hundreds of nuclei in a shared cytoplasm. We investigated
nuclear heterogeneity and transcriptional dynamics in the uninjured and regenerating …

[HTML][HTML] RNA localization is a key determinant of neurite-enriched proteome

…, D Van Den Bruck, C Ciolli Mattioli, V Franke… - Nature …, 2017 - nature.com
Protein subcellular localization is fundamental to the establishment of the body axis, cell
migration, synaptic plasticity, and a vast range of other biological processes. Protein localization …

[HTML][HTML] Cell-type specialization is encoded by specific chromatin topologies

…, A Abentung, G Apostolova, EJ Paul, V Franke… - Nature, 2021 - nature.com
The three-dimensional (3D) structure of chromatin is intrinsically associated with gene
regulation and cell function 1 , 2 – 3 . Methods based on chromatin conformation capture have …

[HTML][HTML] A cohesin-independent role for NIPBL at promoters provides insights in CdLS

J Zuin, V Franke, WFJ van IJcken, A Van Der Sloot… - PLoS …, 2014 - journals.plos.org
The cohesin complex is crucial for chromosome segregation during mitosis and has recently
also been implicated in transcriptional regulation and chromatin architecture. The NIPBL …

The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3′ processing

K Abe, R Yamamoto, V Franke, M Cao, Y Suzuki… - The EMBO …, 2015 - embopress.org
Initiation of zygotic transcription in mammals is poorly understood. In mice, zygotic transcription
is first detected shortly after pronucleus formation in 1‐cell embryos, but the identity of the …

Sculpting the transcriptome during the oocyte-to-embryo transition in mouse

P Svoboda, V Franke, RM Schultz - Current topics in developmental …, 2015 - Elsevier
In mouse, the oocyte-to-embryo transition entails converting a highly differentiated oocyte to
totipotent blastomeres. This transition is driven by degradation of maternal mRNAs, which …

Bulk and single-cell gene expression profiling of SARS-CoV-2 infected human cell lines identifies molecular targets for therapeutic intervention

W Emanuel, M Kirstin, F Vedran, D Asija, GL Theresa… - BioRxiv, 2020 - biorxiv.org
The coronavirus disease 2019 (COVID-19) pandemic, caused by the novel severe acute
respiratory syndrome coronavirus 2 (SARS-CoV-2), is an ongoing global health threat with …