ChIP-seq accurately predicts tissue-specific activity of enhancers
…, I Plajzer-Frick, M Shoukry, C Wright, F Chen, V Afzal… - Nature, 2009 - nature.com
A major yet unresolved quest in decoding the human genome is the identification of the
regulatory sequences that control the spatial and temporal expression of genes. Distant-acting …
regulatory sequences that control the spatial and temporal expression of genes. Distant-acting …
In vivo enhancer analysis of human conserved non-coding sequences
…, KD Lewis, I Plajzer-Frick, J Akiyama, S De Val, V Afzal… - Nature, 2006 - nature.com
Identifying the sequences that direct the spatial and temporal expression of genes and
defining their function in vivo remains a significant challenge in the annotation of vertebrate …
defining their function in vivo remains a significant challenge in the annotation of vertebrate …
Scanning human gene deserts for long-range enhancers
MA Nobrega, I Ovcharenko, V Afzal, EM Rubin - Science, 2003 - science.org
Approximately 25% of the genome consists of gene-poor regions greater than 500 kb,
termed gene deserts (1). These segments have been minimally explored, and their functional …
termed gene deserts (1). These segments have been minimally explored, and their functional …
Enhancer redundancy provides phenotypic robustness in mammalian development
…, V Tissières, Y Fukuda-Yuzawa, BJ Mannion, SY Afzal… - Nature, 2018 - nature.com
Distant-acting tissue-specific enhancers, which regulate gene expression, vastly outnumber
protein-coding genes in mammalian genomes, but the functional importance of this …
protein-coding genes in mammalian genomes, but the functional importance of this …
ChIP-Seq identification of weakly conserved heart enhancers
…, I Plajzer-Frick, M Shoukry, C Wright, F Chen, V Afzal… - Nature …, 2010 - nature.com
Accurate control of tissue-specific gene expression plays a pivotal role in heart development,
but few cardiac transcriptional enhancers have thus far been identified. Extreme noncoding-…
but few cardiac transcriptional enhancers have thus far been identified. Extreme noncoding-…
Targeted deletion of the 9p21 non-coding coronary artery disease risk interval in mice
Sequence polymorphisms in a 58-kilobase (kb) interval on chromosome 9p21 confer a
markedly increased risk of coronary artery disease (CAD), the leading cause of death worldwide …
markedly increased risk of coronary artery disease (CAD), the leading cause of death worldwide …
Human-specific gain of function in a developmental enhancer
…, I Plajzer-Frick, H Morrison, DR FitzPatrick, V Afzal… - Science, 2008 - science.org
Changes in gene regulation are thought to have contributed to the evolution of human
development. However, in vivo evidence for uniquely human developmental regulatory function …
development. However, in vivo evidence for uniquely human developmental regulatory function …
[HTML][HTML] Deletion of ultraconserved elements yields viable mice
Ultraconserved elements have been suggested to retain extended perfect sequence identity
between the human, mouse, and rat genomes due to essential functional properties. To …
between the human, mouse, and rat genomes due to essential functional properties. To …
[HTML][HTML] Rapid and pervasive changes in genome-wide enhancer usage during mammalian development
…, S Phouanenavong, I Plajzer-Frick, M Shoukry, V Afzal… - Cell, 2013 - cell.com
Enhancers are distal regulatory elements that can activate tissue-specific gene expression
and are abundant throughout mammalian genomes. Although substantial progress has been …
and are abundant throughout mammalian genomes. Although substantial progress has been …
Ultraconservation identifies a small subset of extremely constrained developmental enhancers
…, M Shoukry, KD Lewis, A Holt, I Plajzer-Frick, V Afzal… - Nature …, 2008 - nature.com
Extended perfect human-rodent sequence identity of at least 200 base pairs (ultraconservation)
is potentially indicative of evolutionary or functional uniqueness. We used a transgenic …
is potentially indicative of evolutionary or functional uniqueness. We used a transgenic …