User profiles for Vinay S. Swamy

Vinay Swamy

Columbia University
Verified email at cumc.columbia.edu
Cited by 169

Building the mega single-cell transcriptome ocular meta-atlas

VS Swamy, TD Fufa, RB Hufnagel… - GigaScience, 2021 - academic.oup.com
Background: The development of highly scalable single-cell transcriptome technology has
resulted in the creation of thousands of datasets, >30 in the retina alone. Analyzing the …

[HTML][HTML] Phenotypic and functional characterization of corneal endothelial cells during in vitro expansion

RF Frausto, VS Swamy, GSL Peh, PM Boere… - Scientific reports, 2020 - nature.com
The advent of cell culture-based methods for the establishment and expansion of human
corneal endothelial cells (CEnC) has provided a source of transplantable corneal endothelium, …

[HTML][HTML] ZEB1 insufficiency causes corneal endothelial cell state transition and altered cellular processing

RF Frausto, DD Chung, PM Boere, VS Swamy… - PLoS …, 2019 - journals.plos.org
The zinc finger e-box binding homeobox 1 (ZEB1) transcription factor is a master regulator
of the epithelial to mesenchymal transition (EMT), and of the reverse mesenchymal to …

[HTML][HTML] Alternative polyadenylation factors link cell cycle to migration

M Mitra, EL Johnson, VS Swamy, LE Nersesian… - Genome biology, 2018 - Springer
Background In response to a wound, fibroblasts are activated to migrate toward the wound,
to proliferate and to contribute to the wound healing process. We hypothesize that changes …

Punctiform and polychromatic pre-Descemet corneal dystrophy: clinical evaluation and identification of the genetic basis

…, A Barrington, K Jatavallabhula, VS Swamy… - American journal of …, 2020 - Elsevier
Purpose This study reports the clinical features and genetic bases of 3 previously unreported
families with punctiform and polychromatic pre-Descemet corneal dystrophy (PPPCD). …

[HTML][HTML] PLAE web app enables powerful searching and multiple visualizations across one million unified single-cell ocular transcriptomes

VS Swamy, ZA Batz… - … Vision Science & …, 2023 - iovs.arvojournals.org
Purpose: To create a high-performance reactive web application to query single-cell gene
expression data across cell type, species, study, and other factors. Methods: We updated the …

A short-read de novo transcriptome construction pipeline optimized by long reads reveals novel developmentally regulated gene isoforms and disease targets in …

VS Swamy, TD Fufa, RB Hufnagel, DM McGaughey - bioRxiv, 2020 - biorxiv.org
De novo transcriptome construction from short-read RNA-seq is a common method for
reconstructing previously annotated and novel mRNA transcripts within a given sample. However, …

Factors Affecting Primary Human Corneal Endothelial Cell Adhesion

RF Frausto, VS Swamy, DD Chung… - … & Visual Science, 2018 - iovs.arvojournals.org
Methods: Primary CEnC were prepared from age-matched donor corneas using two
isolation/growth protocols, Tryp-LN-F99 or ColA-ColIV-M4M5. To measure cell adhesion we used …

Emerging roles of vitamin D in various spectra of diseases.

RS Kaulgud, AC Shreyas, SP Vinay… - International Journal of …, 2013 - cabdirect.org
Vitamin D has been found to be useful for a number of conditions. Various studies have
found it useful in different disorders to varying degree. It is being prescribed very frequently in …

[PDF][PDF] Synthesis, Spectroscopic And Crystal Structure Studies of N-(Aryl)-4-Methoxybenzenesulfonamides:(4-OCH3) C6H4-SO2NH-C6H4 (IX)

VZ Rodrigues, S Swamy… - Journal of Applicable …, 2015 - academia.edu
Synthesis of three N-(aryl)-4-methoxybenzenesulfonamides of the general formula,(4-OCH3)
C6H4-SO2NH-C6H4 (iX)[where iX= H (1), 4-OCH3 (2) & 4-Cl (3)], by the reaction between …