[HTML][HTML] Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads

J Martin, VM Bruno, Z Fang, X Meng, M Blow, T Zhang… - BMC genomics, 2010 - Springer
Background Comprehensive annotation and quantification of transcriptomes are
outstanding problems in functional genomics. While high throughput mRNA sequencing (RNA-Seq) …

Comprehensive annotation of the transcriptome of the human fungal pathogen Candida albicans using RNA-seq

VM Bruno, Z Wang, SL Marjani, GM Euskirchen… - Genome …, 2010 - genome.cshlp.org
Candida albicans is the major invasive fungal pathogen of humans, causing diseases
ranging from superficial mucosal infections to disseminated, systemic infections that are often …

[HTML][HTML] Salmonella Typhimurium Type III Secretion Effectors Stimulate Innate Immune Responses in Cultured Epithelial Cells

VM Bruno, S Hannemann, M Lara-Tejero… - PLoS …, 2009 - journals.plos.org
Recognition of conserved bacterial products by innate immune receptors leads to inflammatory
responses that control pathogen spread but that can also result in pathology. Intestinal …

Candida albicans Mds3p, a Conserved Regulator of pH Responses and Virulence Identified Through Insertional Mutagenesis

DA Davis, VM Bruno, L Loza, SG Filler, AP Mitchell - Genetics, 2002 - academic.oup.com
Candida albicans is a commensal fungus that causes diverse infections after antibiotic use or
immune debilitation. Gene discovery has been limited because the organism is an asexual …

[PDF][PDF] IL-17 receptor signaling in oral epithelial cells is critical for protection against oropharyngeal candidiasis

HR Conti, VM Bruno, EE Childs, S Daugherty… - Cell host & …, 2016 - cell.com
Signaling through the IL-17 receptor (IL-17R) is required to prevent oropharyngeal candidiasis
(OPC) in mice and humans. However, the IL-17-responsive cell type(s) that mediate …

Candida albicans Biofilm-Defective Mutants

ML Richard, CJ Nobile, VM Bruno, AP Mitchell - Eukaryotic Cell, 2005 - Am Soc Microbiol
Biofilm formation plays a key role in the life cycles and subsistence of many microorganisms.
For the human fungal pathogen Candida albicans, biofilm development is arguably a …

[HTML][HTML] Control of the C. albicans cell wall damage response by transcriptional regulator Cas5

VM Bruno, S Kalachikov, R Subaran, CJ Nobile… - PLoS …, 2006 - journals.plos.org
The fungal cell wall is vital for growth, development, and interaction of cells with their
environment. The response to cell wall damage is well understood from studies in the budding …

Aberrant type 1 immunity drives susceptibility to mucosal fungal infections

…, KW Hoffman, T Greenwell-Wild, VM Bruno… - Science, 2021 - science.org
INTRODUCTION Studies of monogenic diseases have uncovered the importance of
immune pathways in human tissue-specific immunity and antimicrobial defense. In particular, …

Transcriptomic analysis of vulvovaginal candidiasis identifies a role for the NLRP3 inflammasome

VM Bruno, AC Shetty, J Yano, PL Fidel Jr, MC Noverr… - MBio, 2015 - Am Soc Microbiol
ABSTRACT Treatment of vulvovaginal candidiasis (VVC), caused most frequently by Candida
albicans , represents a significant unmet clinical need. C. albicans , as both a commensal …

[HTML][HTML] Best practices on the differential expression analysis of multi-species RNA-seq

M Chung, VM Bruno, DA Rasko, CA Cuomo, JF Muñoz… - Genome biology, 2021 - Springer
Advances in transcriptome sequencing allow for simultaneous interrogation of differentially
expressed genes from multiple species originating from a single RNA sample, termed dual or …