User profiles for Vivek Krishnakumar

Vivek Krishnakumar

Illumina Inc.
Verified email at illumina.com
Cited by 4447

[HTML][HTML] The Medicago genome provides insight into the evolution of rhizobial symbioses

…, M Spannagl, F Cheung, S De Mita, V Krishnakumar… - nature, 2011 - nature.com
Legumes (Fabaceae or Leguminosae) are unique among cultivated plants for their ability to
carry out endosymbiotic nitrogen fixation with rhizobial bacteria, a process that takes place …

Araport11: a complete reannotation of the Arabidopsis thaliana reference genome

CY Cheng, V Krishnakumar, AP Chan… - The Plant …, 2017 - Wiley Online Library
The flowering plant Arabidopsis thaliana is a dicot model organism for research in many
aspects of plant biology. A comprehensive annotation of its genome paves the way for …

[HTML][HTML] Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

…, WE Clarke, CD Town, J Nixon, V Krishnakumar… - Genome biology, 2014 - Springer
Background Brassica oleracea is a valuable vegetable species that has contributed to human
health and nutrition for hundreds of years and comprises multiple distinct cultivar groups …

[HTML][HTML] An improved genome release (version Mt4. 0) for the model legume Medicago truncatula

H Tang, V Krishnakumar, S Bidwell, B Rosen, A Chan… - BMC genomics, 2014 - Springer
Background Medicago truncatula, a close relative of alfalfa, is a preeminent model for studying
nitrogen fixation, symbiosis, and legume genomics. The Medicago sequencing project …

ePlant: visualizing and exploring multiple levels of data for hypothesis generation in plant biology

…, LA Kelley, MJ Sternberg, V Krishnakumar… - The Plant …, 2017 - academic.oup.com
A big challenge in current systems biology research arises when different types of data must
be accessed from separate sources and visualized using separate tools. The high cognitive …

Araport: the Arabidopsis information portal

V Krishnakumar, MR Hanlon, S Contrino… - Nucleic acids …, 2015 - academic.oup.com
The Arabidopsis Information Portal ( https://www.araport.org ) is a new online resource for
plant biology research. It houses the Arabidopsis thaliana genome sequence and associated …

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome

…, N Zafar, H Tang, M Hadjithomas, V Krishnakumar… - elife, 2016 - elifesciences.org
10.7554/eLife.19090.001 The germline genome of the binucleated ciliate Tetrahymena
thermophila undergoes programmed chromosome breakage and massive DNA elimination to …

MarkerMiner 1.0: A new application for phylogenetic marker development using angiosperm transcriptomes

…, N García, GT Godden, V Krishnakumar… - Applications in plant …, 2015 - Wiley Online Library
Premise of the study: Targeted sequencing using next‐generation sequencing (NGS)
platforms offers enormous potential for plant systematics by enabling economical acquisition of …

MTGD: The Medicago truncatula Genome Database

V Krishnakumar, M Kim, BD Rosen… - Plant and Cell …, 2015 - academic.oup.com
Medicago truncatula, a close relative of alfalfa (Medicago sativa), is a model legume used
for studying symbiotic nitrogen fixation, mycorrhizal interactions and legume genomics. J. …

An 'eFP‐Seq Browser'for visualizing and exploring RNA sequencing data

…, SR Watharkar, AP Chan, V Krishnakumar… - The Plant …, 2019 - Wiley Online Library
Improvements in next‐generation sequencing technologies have resulted in dramatically
reduced sequencing costs. This has led to an explosion of ‘‐seq’‐based methods, of which …