Analysis of evolution of exon-intron structure of eukaryotic genes

IB Rogozin, AV Sverdlov, VN Babenko… - Briefings in …, 2005 - academic.oup.com
The availability of multiple, complete eukaryotic genome sequences allows one to address
many fundamental evolutionary questions on genome scale. One such important, long-…

Prevalence of intron gain over intron loss in the evolution of paralogous gene families

VN Babenko, IB Rogozin, SL Mekhedov… - Nucleic Acids …, 2004 - academic.oup.com
The mechanisms and evolutionary dynamics of intron insertion and loss in eukaryotic genes
remain poorly understood. Reconstruction of parsimonious scenarios of gene structure …

Variability in the 2′–5′-oligoadenylate synthetase gene cluster is associated with human predisposition to tick-borne encephalitis virus-induced disease

AV Barkhash, AA Perelygin, VN Babenko… - Journal of Infectious …, 2010 - academic.oup.com
The 2′–5′-oligoadenylate synthetase (2′–5′-OAS) family members are interferon-induced
antiviral proteins. Twenty-three single nucleotide polymorphisms located within the OAS1…

Evolutionary conservation suggests a regulatory function of AUG triplets in 5′-UTRs of eukaryotic genes

A Churbanov, IB Rogozin, VN Babenko… - Nucleic acids …, 2005 - academic.oup.com
By comparing sequences of human, mouse and rat orthologous genes, we show that in 5′-untranslated
regions (5′-UTRs) of mammalian cDNAs but not in 3′-UTRs or coding …

Single nucleotide polymorphism in the promoter region of the CD209 gene is associated with human predisposition to severe forms of tick-borne encephalitis

AV Barkhash, AA Perelygin, VN Babenko, MA Brinton… - Antiviral research, 2012 - Elsevier
Tick-borne encephalitis virus (TBEV) is a neurotropic, positive-sense RNA virus of the
genus Flavivirus (family Flaviviridae) which can cause a variety of clinical manifestations in …

[HTML][HTML] Genetic Organization of Interphase Chromosome Bands and Interbands in Drosophila melanogaster

…, LV Boldyreva, DS Demidova, VN Babenko… - PloS one, 2014 - journals.plos.org
Drosophila melanogaster polytene chromosomes display specific banding pattern; the
underlying genetic organization of this pattern has remained elusive for many years. In the …

[HTML][HTML] Eukaryotic mRNAs encoding abundant and scarce proteins are statistically dissimilar in many structural features

…, IV Ischenko, DG Vorobiev, AE Kel, VN Babenko… - FEBS letters, 1998 - Elsevier
It is well known that non-coding mRNA sequences are dissimilar in many structural features.
For individual mRNAs correlations were found for some of these features and their …

[HTML][HTML] Altered Slc25 family gene expression as markers of mitochondrial dysfunction in brain regions under experimental mixed anxiety/depression-like disorder

VN Babenko, DA Smagin, AG Galyamina… - BMC neuroscience, 2018 - Springer
Background Development of anxiety- and depression-like states under chronic social defeat
stress in mice has been shown by many experimental studies. In this article, the …

[HTML][HTML] Genomic landscape of CpG rich elements in human

VN Babenko, IV Chadaeva, YL Orlov - BMC evolutionary biology, 2017 - Springer
Background The studies on CpG islands (CGI) and Alu elements functions, evolution, and
distribution in the genome started since the discovery in nineteen eighties (1981, 1986, …

[HTML][HTML] Identical Functional Organization of Nonpolytene and Polytene Chromosomes in Drosophila melanogaster

…, SA Demakov, EB Kokoza, VF Semeshin, VN Babenko… - PloS one, 2011 - journals.plos.org
Salivary gland polytene chromosomes demonstrate banding pattern, genetic meaning of
which is an enigma for decades. Till now it is not known how to mark the band/interband …