User profiles for W. Iwasaki
Wataru IwasakiProfessor, Department of Integrated Biosciences, the University of Tokyo Verified email at ku-tokyo.ac.jp Cited by 5452 |
Metagenomics and bioinformatics in microbial ecology: current status and beyond
Metagenomic approaches are now commonly used in microbial ecology to study microbial
communities in more detail, including many strains that cannot be cultivated in the laboratory. …
communities in more detail, including many strains that cannot be cultivated in the laboratory. …
MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species
We developed a set of universal PCR primers (MiFish-U/E) for metabarcoding environmental
DNA (eDNA) from fishes. Primers were designed using aligned whole mitochondrial …
DNA (eDNA) from fishes. Primers were designed using aligned whole mitochondrial …
MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline
W Iwasaki, T Fukunaga, R Isagozawa… - Molecular biology …, 2013 - academic.oup.com
Mitofish is a database of fish mitochondrial genomes (mitogenomes) that includes powerful
and precise de novo annotations for mitogenome sequences. Fish occupy an important …
and precise de novo annotations for mitogenome sequences. Fish occupy an important …
[HTML][HTML] BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains
…, Y Igarashi, H Itaya, M Ito, W Iwasaki… - Journal of biomedical …, 2014 - Springer
The application of semantic technologies to the integration of biological data and the
interoperability of bioinformatics analysis and visualization tools has been the common theme of a …
interoperability of bioinformatics analysis and visualization tools has been the common theme of a …
[HTML][HTML] Contribution of histone N-terminal tails to the structure and stability of nucleosomes
W Iwasaki, Y Miya, N Horikoshi, A Osakabe, H Taguchi… - FEBS open bio, 2013 - Elsevier
Histones are the protein components of the nucleosome, which forms the basic architecture
of eukaryotic chromatin. Histones H2A, H2B, H3, and H4 are composed of two common …
of eukaryotic chromatin. Histones H2A, H2B, H3, and H4 are composed of two common …
MitoFish and MiFish pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding
…, T Fukunaga, T Sado, W Iwasaki - Molecular biology and …, 2018 - academic.oup.com
Fish mitochondrial genome (mitogenome) data form a fundamental basis for revealing
vertebrate evolution and hydrosphere ecology. Here, we report recent functional updates of …
vertebrate evolution and hydrosphere ecology. Here, we report recent functional updates of …
Environmental DNA enables detection of terrestrial mammals from forest pond water
Terrestrial animals must have frequent contact with water to survive, implying that
environmental DNA ( eDNA ) originating from those animals should be detectable from places …
environmental DNA ( eDNA ) originating from those animals should be detectable from places …
An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols
Environmental DNA (eDNA)‐based assessments of macro‐organisms have now become an
essential approach for biomonitoring. eDNA survey methods have a number of advantages …
essential approach for biomonitoring. eDNA survey methods have a number of advantages …
[HTML][HTML] Massive image-based single-cell profiling reveals high levels of circulating platelet aggregates in patients with COVID-19
A characteristic clinical feature of COVID-19 is the frequent incidence of microvascular
thrombosis. In fact, COVID-19 autopsy reports have shown widespread thrombotic …
thrombosis. In fact, COVID-19 autopsy reports have shown widespread thrombotic …
A fast likelihood method to reconstruct and visualize ancestral scenarios
The reconstruction of ancestral scenarios is widely used to study the evolution of characters
along phylogenetic trees. One commonly uses the marginal posterior probabilities of the …
along phylogenetic trees. One commonly uses the marginal posterior probabilities of the …