User profiles for W. Iwasaki

Wataru Iwasaki

Professor, Department of Integrated Biosciences, the University of Tokyo
Verified email at ku-tokyo.ac.jp
Cited by 5452

Metagenomics and bioinformatics in microbial ecology: current status and beyond

S Hiraoka, C Yang, W Iwasaki - Microbes and environments, 2016 - jstage.jst.go.jp
Metagenomic approaches are now commonly used in microbial ecology to study microbial
communities in more detail, including many strains that cannot be cultivated in the laboratory. …

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

…, H Araki, M Kondoh, W Iwasaki - Royal Society …, 2015 - royalsocietypublishing.org
We developed a set of universal PCR primers (MiFish-U/E) for metabarcoding environmental
DNA (eDNA) from fishes. Primers were designed using aligned whole mitochondrial …

MitoFish and MitoAnnotator: a mitochondrial genome database of fish with an accurate and automatic annotation pipeline

W Iwasaki, T Fukunaga, R Isagozawa… - Molecular biology …, 2013 - academic.oup.com
Mitofish is a database of fish mitochondrial genomes (mitogenomes) that includes powerful
and precise de novo annotations for mitogenome sequences. Fish occupy an important …

[HTML][HTML] BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

…, Y Igarashi, H Itaya, M Ito, W Iwasaki… - Journal of biomedical …, 2014 - Springer
The application of semantic technologies to the integration of biological data and the
interoperability of bioinformatics analysis and visualization tools has been the common theme of a …

[HTML][HTML] Contribution of histone N-terminal tails to the structure and stability of nucleosomes

W Iwasaki, Y Miya, N Horikoshi, A Osakabe, H Taguchi… - FEBS open bio, 2013 - Elsevier
Histones are the protein components of the nucleosome, which forms the basic architecture
of eukaryotic chromatin. Histones H2A, H2B, H3, and H4 are composed of two common …

MitoFish and MiFish pipeline: a mitochondrial genome database of fish with an analysis pipeline for environmental DNA metabarcoding

…, T Fukunaga, T Sado, W Iwasaki - Molecular biology and …, 2018 - academic.oup.com
Fish mitochondrial genome (mitogenome) data form a fundamental basis for revealing
vertebrate evolution and hydrosphere ecology. Here, we report recent functional updates of …

Environmental DNA enables detection of terrestrial mammals from forest pond water

…, T Sado, Y Sato, M Takeshita, W Iwasaki… - Molecular Ecology …, 2017 - Wiley Online Library
Terrestrial animals must have frequent contact with water to survive, implying that
environmental DNA ( eDNA ) originating from those animals should be detectable from places …

An illustrated manual for environmental DNA research: Water sampling guidelines and experimental protocols

…, H Yamanaka, H Araki, W Iwasaki… - Environmental …, 2021 - Wiley Online Library
Environmental DNA (eDNA)‐based assessments of macro‐organisms have now become an
essential approach for biomonitoring. eDNA survey methods have a number of advantages …

[HTML][HTML] Massive image-based single-cell profiling reveals high levels of circulating platelet aggregates in patients with COVID-19

…, H Zhang, S Miyata, GK Rohde, W Iwasaki… - Nature …, 2021 - nature.com
A characteristic clinical feature of COVID-19 is the frequent incidence of microvascular
thrombosis. In fact, COVID-19 autopsy reports have shown widespread thrombotic …

A fast likelihood method to reconstruct and visualize ancestral scenarios

SA Ishikawa, A Zhukova, W Iwasaki… - Molecular biology and …, 2019 - academic.oup.com
The reconstruction of ancestral scenarios is widely used to study the evolution of characters
along phylogenetic trees. One commonly uses the marginal posterior probabilities of the …