User profiles for W. Vranken

Wim Vranken

Research professor, Vrije Universiteit Brussel, Belgium
Verified email at vub.be
Cited by 12481

The CCPN data model for NMR spectroscopy: development of a software pipeline

WF Vranken, W Boucher, TJ Stevens… - Proteins: structure …, 2005 - Wiley Online Library
To address data management and data exchange problems in the nuclear magnetic
resonance (NMR) community, the Collaborative Computing Project for the NMR community (CCPN) …

[HTML][HTML] ACPYPE-Antechamber python parser interface

AW Sousa da Silva, WF Vranken - BMC research notes, 2012 - Springer
Background ACPYPE (or AnteChamber PYthon Parser interfacE) is a wrapper script around
the ANTECHAMBER software that simplifies the generation of small molecule topologies …

The CCPN project: an interim report on a data model for the NMR community

…, J Ionides, E Ulrich, W Boucher, W Vranken… - nature structural …, 2002 - nature.com
… Wim Vranken … John Ionides, Wim Vranken, Kim Henrick & Janet Thornton … Wim Vranken

Minimum information guidelines for experiments structurally characterizing intrinsically disordered protein regions

…, L Tenorio, T Viennet, P Tompa, W Vranken… - Nature …, 2023 - nature.com
An unambiguous description of an experiment, and the subsequent biological observation,
is vital for accurate data interpretation. Minimum information guidelines define the …

Determination of secondary structure populations in disordered states of proteins using nuclear magnetic resonance chemical shifts

C Camilloni, A De Simone, WF Vranken… - Biochemistry, 2012 - ACS Publications
One of the major open challenges in structural biology is to achieve effective descriptions of
disordered states of proteins. This problem is difficult because these states are …

RECOORD: a recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank

…, JF Doreleijers, W Vranken… - PROTEINS …, 2005 - Wiley Online Library
State‐of‐the‐art methods based on CNS and CYANA were used to recalculate the nuclear
magnetic resonance (NMR) solution structures of 500+ proteins for which coordinates and …

MobiDB: intrinsically disordered proteins in 2021

…, P Ramasamy, Z Dosztányi, WF Vranken… - Nucleic acids …, 2021 - academic.oup.com
The MobiDB database (URL: https://mobidb.org/ ) provides predictions and annotations for
intrinsically disordered proteins. Here, we report recent developments implemented in …

DisProt 7.0: a major update of the database of disordered proteins

…, N Veljković, S Ventura, W Vranken… - Nucleic acids …, 2017 - academic.oup.com
The Database of Protein Disorder (DisProt, URL: www.disprot.org ) has been significantly
updated and upgraded since its last major renewal in 2007. The current release holds …

WeNMR: structural biology on the grid

…, P Güntert, H Schwalbe, WF Vranken… - Journal of Grid …, 2012 - Springer
The WeNMR ( http://www.wenmr.eu ) project is a European Union funded international effort
to streamline and automate analysis of Nuclear Magnetic Resonance (NMR) and Small …

DisProt: intrinsic protein disorder annotation in 2020

…, N Veljkovic, S Ventura, W Vranken… - Nucleic acids …, 2020 - academic.oup.com
The Database of Protein Disorder (DisProt, URL: https://disprot.org ) provides manually curated
annotations of intrinsically disordered proteins from the literature. Here we report recent …