User profiles for Wandrille Duchemin

Wandrille Duchemin

Center for Scientific Computing (sciCORE), University of Basel, Basel, Switzerland
Verified email at unibas.ch
Cited by 480

Tracing the ancestry of modern bread wheats

C Pont, T Leroy, M Seidel, A Tondelli, W Duchemin… - Nature …, 2019 - nature.com
For more than 10,000 years, the selection of plant and animal traits that are better tailored
for human use has shaped the development of civilizations. During this period, bread wheat (…

[HTML][HTML] Severe Neuro-COVID is associated with peripheral immune signatures, autoimmunity and neurodegeneration: a prospective cross-sectional study

…, L Kulsvehagen, E Pössnecker, W Duchemin… - Nature …, 2022 - nature.com
Growing evidence links COVID-19 with acute and long-term neurological dysfunction.
However, the pathophysiological mechanisms resulting in central nervous system involvement …

Immunotherapy of glioblastoma explants induces interferon-γ responses and spatial immune cell rearrangements in tumor center, but not periphery

…, CP Zinner, EM Bartoszek, W Duchemin… - Science …, 2022 - science.org
A patient-tailored, ex vivo drug response platform for glioblastoma (GBM) would facilitate
therapy planning, provide insights into treatment-induced mechanisms in the immune tumor …

Tracing 100 million years of grass genome evolutionary plasticity

…, C Pont, P Civan, E Mardoc, W Duchemin… - The Plant …, 2023 - Wiley Online Library
Grasses derive from a family of monocotyledonous plants that includes crops of major economic
importance such as wheat, rice, sorghum and barley, sharing a common ancestor some …

DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies

W Duchemin, Y Anselmetti, M Patterson… - Genome biology and …, 2017 - academic.oup.com
DeCoSTAR is a software that aims at reconstructing the organization of ancestral genes or
genomes in the form of sets of neighborhood relations (adjacencies) between pairs of …

[HTML][HTML] Episodes of gene flow and selection during the evolutionary history of domesticated barley

P Civáň, K Drosou, D Armisen-Gimenez, W Duchemin… - BMC genomics, 2021 - Springer
Background Barley is one of the founder crops of Neolithic agriculture and is among the
most-grown cereals today. The only trait that universally differentiates the cultivated and wild …

RecPhyloXML: a format for reconciled gene trees

W Duchemin, G Gence, AM Arigon Chifolleau… - …, 2018 - academic.oup.com
Motivation A reconciliation is an annotation of the nodes of a gene tree with evolutionary
events—for example, speciation, gene duplication, transfer, loss, etc.—along with a mapping …

[HTML][HTML] HyLiTE: accurate and flexible analysis of gene expression in hybrid and allopolyploid species

W Duchemin, PY Dupont, MA Campbell, ARD Ganley… - BMC …, 2015 - Springer
Background Forming a new species through the merger of two or more divergent parent
species is increasingly seen as a key phenomenon in the evolution of many biological systems. …

[HTML][HTML] Multi-insecticide resistant malaria vectors in the field remain susceptible to malathion, despite the presence of Ace1 point mutations

NC Wipf, W Duchemin, FPA Kouadio, BK Fodjo… - PLoS …, 2022 - journals.plos.org
Insecticide resistance in Anopheles mosquitoes is seriously threatening the success of
insecticide-based malaria vector control. Surveillance of insecticide resistance in mosquito …

[HTML][HTML] Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes

Y Anselmetti, W Duchemin, E Tannier, C Chauve… - BMC genomics, 2018 - Springer
Background Genomes rearrangements carry valuable information for phylogenetic inference
or the elucidation of molecular mechanisms of adaptation. However, the detection of …