The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution
…, RT Moreland, DK Simmons, BJ Koch, WR Francis… - Science, 2013 - science.org
Introduction An understanding of ctenophore biology is critical for reconstructing events that
occurred early in animal evolution. The phylogenetic relationship of ctenophores (comb …
occurred early in animal evolution. The phylogenetic relationship of ctenophores (comb …
The last common ancestor of animals lacked the HIF pathway and respired in low-oxygen environments
10.7554/eLife.31176.001 Animals have a carefully orchestrated relationship with oxygen.
When exposed to low environmental oxygen concentrations, and during periods of increased …
When exposed to low environmental oxygen concentrations, and during periods of increased …
The genome of the contractile demosponge Tethya wilhelma and the evolution of metazoan neural signalling pathways
Porifera are a diverse animal phylum with species performing important ecological roles in
aquatic ecosystems, and have become models for multicellularity and early-animal evolution. …
aquatic ecosystems, and have become models for multicellularity and early-animal evolution. …
Similar ratios of introns to intergenic sequence across animal genomes
WR Francis, G Wörheide - Genome biology and evolution, 2017 - academic.oup.com
One central goal of genome biology is to understand how the usage of the genome differs
between organisms. Our knowledge of genome composition, needed for downstream …
between organisms. Our knowledge of genome composition, needed for downstream …
Profiling cellular diversity in sponges informs animal cell type and nervous system evolution
…, K Achim, NL Schieber, L Pan, F Ruperti, WR Francis… - Science, 2021 - science.org
The evolutionary origin of metazoan cell types such as neurons and muscles is not known.
Using whole-body single-cell RNA sequencing in a sponge, an animal without nervous …
Using whole-body single-cell RNA sequencing in a sponge, an animal without nervous …
[HTML][HTML] Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri
NJ Kenny, WR Francis, RE Rivera-Vicéns… - Nature …, 2020 - nature.com
The genomes of non-bilaterian metazoans are key to understanding the molecular basis of
early animal evolution. However, a full comprehension of how animal-specific traits, such as …
early animal evolution. However, a full comprehension of how animal-specific traits, such as …
[HTML][HTML] A comparison across non-model animals suggests an optimal sequencing depth for de novotranscriptome assembly
WR Francis, LM Christianson, R Kiko, ML Powers… - BMC genomics, 2013 - Springer
Background The lack of genomic resources can present challenges for studies of non-model
organisms. Transcriptome sequencing offers an attractive method to gather information …
organisms. Transcriptome sequencing offers an attractive method to gather information …
[HTML][HTML] Comparative genomics and the nature of placozoan species
M Eitel, WR Francis, F Varoqueaux, J Daraspe… - PLoS …, 2018 - journals.plos.org
Placozoans are a phylum of nonbilaterian marine animals currently represented by a single
described species, Trichoplax adhaerens, Schulze 1883. Placozoans arguably show the …
described species, Trichoplax adhaerens, Schulze 1883. Placozoans arguably show the …
Predicted microbial secretomes and their target substrates in marine sediment
WD Orsi, TA Richards, WR Francis - Nature microbiology, 2018 - nature.com
Scientific drilling has identified a biosphere in marine sediments 1 , which contain many
uncultivated microbial groups known only by their DNA sequences 2 , 3 – 4 . Recycling of …
uncultivated microbial groups known only by their DNA sequences 2 , 3 – 4 . Recycling of …
The role of homology and orthology in the phylogenomic analysis of metazoan gene content
Resolving the relationships of animals (Metazoa) is crucial to our understanding of the origin
of key traits such as muscles, guts, and nerves. However, a broadly accepted metazoan …
of key traits such as muscles, guts, and nerves. However, a broadly accepted metazoan …