Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations

…, E Rodgers-Melnick, J Martin, P Ranjan, W Muchero… - Nature …, 2014 - nature.com
Forest trees are dominant components of terrestrial ecosystems that have global ecological
and economic importance. Despite distributions that span wide environmental gradients, …

[HTML][HTML] Construct design for CRISPR/Cas-based genome editing in plants

…, Y Zhang, G Yuan, K De, JG Chen, W Muchero… - Trends in Plant …, 2021 - cell.com
CRISPR construct design is a key step in the practice of genome editing, which includes
identification of appropriate Cas proteins, design and selection of guide RNAs (gRNAs), and …

Genome‐wide association implicates numerous genes underlying ecological trait variation in natural populations of Populus trichocarpa

…, J Hannemann, M Friedmann, W Muchero… - New …, 2014 - Wiley Online Library
In order to uncover the genetic basis of phenotypic trait variation, we used 448 unrelated
wild accessions of black cottonwood (Populus trichocarpa) from much of its range in western …

[HTML][HTML] High-resolution genetic mapping of allelic variants associated with cell wall chemistry in Populus

W Muchero, J Guo, SP DiFazio, JG Chen, P Ranjan… - BMC genomics, 2015 - Springer
Background QTL cloning for the discovery of genes underlying polygenic traits has historically
been cumbersome in long-lived perennial plants like Populus. Linkage disequilibrium-…

[HTML][HTML] Regulation of lignin biosynthesis and its role in growth-defense tradeoffs

…, GA Tuskan, JG Chen, W Muchero - Frontiers in plant …, 2018 - frontiersin.org
Plant growth-defense tradeoffs are fundamental for optimizing plant performance and fitness
in a changing biotic/abiotic environment. This process is thought to involve readjusting …

[HTML][HTML] Role of reactive oxygen species and hormones in plant responses to temperature changes

…, TJ Tschaplinski, GA Tuskan, W Muchero… - International Journal of …, 2021 - mdpi.com
Temperature stress is one of the major abiotic stresses that adversely affect agricultural
productivity worldwide. Temperatures beyond a plant’s physiological optimum can trigger …

A consensus genetic map of cowpea [Vigna unguiculata (L) Walp.] and synteny based on EST-derived SNPs

W Muchero, NN Diop, PR Bhat… - Proceedings of the …, 2009 - National Acad Sciences
Consensus genetic linkage maps provide a genomic framework for quantitative trait loci
identification, map-based cloning, assessment of genetic diversity, association mapping, and …

[HTML][HTML] The Kalanchoë genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism

…, AM Borland, H Guo, JG Chen, W Muchero… - Nature …, 2017 - nature.com
Crassulacean acid metabolism (CAM) is a water-use efficient adaptation of photosynthesis
that has evolved independently many times in diverse lineages of flowering plants. We …

[HTML][HTML] Differences in S/G ratio in natural poplar variants do not predict catalytic depolymerization monomer yields

…, ML Stone, R Katahira, M Reed, W Muchero… - Nature …, 2019 - nature.com
The ratio of syringyl (S) and guaiacyl (G) units in lignin has been regarded as a major factor
in determining the maximum monomer yield from lignin depolymerization. This limit arises …

The Physcomitrella patens chromosome‐scale assembly reveals moss genome structure and evolution

…, J Morata, A Symeonidi, M Hiss, W Muchero… - The Plant …, 2018 - Wiley Online Library
The draft genome of the moss model, Physcomitrella patens, comprised approximately 2000
unordered scaffolds. In order to enable analyses of genome structure and evolution we …