User profiles for Wenjie Shu
Wenjie ShuBeijing Institute of Radiation Medicine Verified email at bmi.ac.cn Cited by 2028 |
Deep learning and its applications in biomedicine
C Cao, F Liu, H Tan, D Song, W Shu… - Genomics …, 2018 - academic.oup.com
Advances in biological and medical technologies have been providing us explosive volumes
of biological and physiological data, such as medical images, electroencephalography, …
of biological and physiological data, such as medical images, electroencephalography, …
[HTML][HTML] Comprehensive identification and annotation of cell type-specific and ubiquitous CTCF-binding sites in the human genome
H Chen, Y Tian, W Shu, X Bo, S Wang - PloS one, 2012 - journals.plos.org
Chromatin insulators are DNA elements that regulate the level of gene expression either by
preventing gene silencing through the maintenance of heterochromatin boundaries or by …
preventing gene silencing through the maintenance of heterochromatin boundaries or by …
BiRen: predicting enhancers with a deep-learning-based model using the DNA sequence alone
Motivation Enhancer elements are noncoding stretches of DNA that play key roles in
controlling gene expression programmes. Despite major efforts to develop accurate enhancer …
controlling gene expression programmes. Despite major efforts to develop accurate enhancer …
Embryonic defects induced by maternal obesity in mice derive from Stella insufficiency in oocytes
Maternal obesity can impair embryo development and offspring health, yet the mechanisms
responsible remain poorly understood. In a high-fat diet (HFD)-based female mouse model …
responsible remain poorly understood. In a high-fat diet (HFD)-based female mouse model …
[HTML][HTML] PEDLA: predicting enhancers with a deep learning-based algorithmic framework
Transcriptional enhancers are non-coding segments of DNA that play a central role in the
spatiotemporal regulation of gene expression programs. However, systematically and …
spatiotemporal regulation of gene expression programs. However, systematically and …
METTL3-mediated m6A is required for murine oocyte maturation and maternal-to-zygotic transition
N 6 -methyladenosine (m 6 A) is the most prevalent epigenetic modification of messenger
RNA (mRNA) in higher eukaryotes; this modification is mainly catalyzed by a …
RNA (mRNA) in higher eukaryotes; this modification is mainly catalyzed by a …
Oocyte competence is maintained by m6A methyltransferase KIAA1429-mediated RNA metabolism during mouse follicular development
…, Q Lu, S Zhou, L Liu, L Liu, B Shen, W Shu… - Cell Death & …, 2020 - nature.com
KIAA1429 (also known as vir-like m 6 A methyltransferase-associated protein (VIRMA)), a
newly identified component of the RNA m 6 A methyltransferase complex, plays critical roles in …
newly identified component of the RNA m 6 A methyltransferase complex, plays critical roles in …
[PDF][PDF] Characterization of metabolic patterns in mouse oocytes during meiotic maturation
L Li, S Zhu, W Shu, Y Guo, Y Guan, J Zeng, H Wang… - Molecular cell, 2020 - cell.com
Well-balanced and timed metabolism is essential for making a high-quality egg. However,
the metabolic framework that supports oocyte development remains poorly understood. Here, …
the metabolic framework that supports oocyte development remains poorly understood. Here, …
A methylation-phosphorylation switch determines Plk1 kinase activity and function in DNA damage repair
…, X Zhao, H Duan, B Cheng, Y Liu, M Zhao, W Shu… - Science …, 2019 - science.org
Polo-like kinase 1 (Plk1) is a crucial regulator of cell cycle progression; but the mechanism
of regulation of Plk1 activity is not well understood. We present evidence that Plk1 activity is …
of regulation of Plk1 activity is not well understood. We present evidence that Plk1 activity is …
De novo identification of replication-timing domains in the human genome by deep learning
Motivation: The de novo identification of the initiation and termination zones—regions that
replicate earlier or later than their upstream and downstream neighbours, respectively—…
replicate earlier or later than their upstream and downstream neighbours, respectively—…